PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g13890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 366aa MW: 40657.7 Da PI: 9.6015 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.4e-09 | 61 | 99 | 1 | 41 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 r +WT+ E++++++a +++ + Wk+I + +g +t q+k Vradi01g13890.1 61 RENWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQLK 99 789*****************77.*********.***99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.61E-10 | 48 | 100 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-9 | 59 | 99 | IPR006447 | Myb domain, plants |
PROSITE profile | PS51293 | 10.77 | 59 | 113 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-4 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-6 | 61 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 61 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.68E-5 | 63 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MVSKNPNPPE GFYLDPTVMA LPGMPPFASV SAAAAAAVSA SNSSDDAAKK IRKPYTITKS 60 RENWTEPEHD KFLEALQLFD RDWKKIEAFV GSKTVIQLKY AISHFLVKFS VLNFLGWESI 120 DPRLEKAYAQ LKIWAQIRSH AQKYFLKVQK SGASEHLPPP RPKRKAAHPY PQKASRNAPV 180 LPQVSGSFQS SSSLLEPGYI LKNDSPAMLK IPMNTVVSSW SNNTLQTVNL SPVTKVNNPC 240 SSGESTPKVR PAVESHGQGP HQGNKIHPLR GKVLPDFTQV YGFIGSVFDP NATEHLQKLK 300 KMDRIDVETV LLLMRNLSIN LTSPDFEDHV SIYVPELMER HKVEMLESQL NFYPALGSYC 360 CCSSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g13890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027923153.1 | 0.0 | protein REVEILLE 6-like | ||||
Swissprot | Q8H0W3 | 1e-104 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A4D6M1K8 | 0.0 | A0A4D6M1K8_VIGUN; Transcription factor | ||||
STRING | GLYMA16G29740.1 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 2e-82 | MYB_related family protein |
Publications ? help Back to Top | |||
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