PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g12360.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 278aa    MW: 32147.7 Da    PI: 4.6255
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g12360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.69e-251151802187
         trihelix  21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        ++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  Vradi01g12360.1 115 AAENGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 180
                      3345599*******************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.13380152IPR017877Myb-like domain
PfamPF138374.6E-16109181No hitNo description
CDDcd122033.80E-17116159No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAETRDSGFV EDTVGYGRGF QRCKCEGSFV GRGFKEAGRS WLPQKCQEVQ REVRERLQVP  60
QENQRRPQRF LEAIEKREQE RVAREEAWRM QEMQRINRER EILAQERSIA AAKDAAENGP  120
KGPLWEEISA LMRKMGYNRN AKRCKEKWEN INKYFKKVKE SNKKRPEDSK TCPYFHQLEA  180
LYKEKNKVEG QMKPESMMAP LMVQPEQQWP PQQVVPPEVT MEDAQNDPMD GGHQEDGEEE  240
EEEDKEIGDE DDEEDDEGGN YEIVASKPAS AGDASAE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g12360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518601.15e-80trihelix transcription factor GT-2
RefseqXP_028199761.15e-80trihelix transcription factor GT-2-like
RefseqXP_028199769.15e-80trihelix transcription factor GT-2-like
SwissprotQ391172e-39TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A445LL611e-78A0A445LL61_GLYSO; Trihelix transcription factor GT-2 isoform A
TrEMBLK7K7301e-78K7K730_SOYBN; Uncharacterized protein
TrEMBLQ8W2401e-81Q8W240_SOYBN; GT-2 factor (Fragment)
STRINGGLYMA02G09060.22e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-41Trihelix family protein