PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g11280.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 532aa MW: 58970.7 Da PI: 5.5747

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g11280.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.9e-07	286	307	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Vradi01g11280.1 286 FCTICGKGFKRDANLRMHMRGH 307 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.29E-5	283	310	No hit	No description
PROSITE profile	PS50157	12.03	285	312	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	285	307	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	0.0011	286	307	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	286	335	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	287	307	IPR007087	Zinc finger, C2H2
SMART	SM00355	47	333	366	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	21	371	393	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MELTWLCNPL IKNLDKEFEM DTNGSLGANN WARSSSLTSD SMSFPGFGLQ NNQPKWDDPS 60 NSDYGIRAEV PFKDFNQPSQ TQSPLPCNSN NEIEIPNQEN CHLNESSQNS ALQDWDPNVM 120 LNNLSFLEEK IHQLQDVVHL IVRQKGIGQP TELVTQEQQL ITTDLTSIII QLISTAGSLL 180 PSVRHNLANT ASLFGQIDQL RGTTIPSGTG GSSSCIQPEN NGGKKMSDQS MQTDLPNNCE 240 MEPNYNVVEQ ELKDEEDVDD GENLAPGSYE ILQLEKEEIL APHTHFCTIC GKGFKRDANL 300 RMHMRGHGDE YKTPAALAKP HKESGSPKLI KRYSCPYPGC KRNKDHKKFQ PLKTILCVKN 360 HYKRTHCDKS YTCSRCNTKK FSVMADLKTH EKHCGKDKWL CSCGTTFSRK DKLFGHIALF 420 QGHTPAIPLD DAKGVAEPPN HDSKENSKVG NVQFSFGSSP SSNGNEVENV MDVKGNCDDP 480 ISFFSSLNFD NSFGGFNEFT RPLFDDSEGS FSFGIPGSFK SDGVSSPDNL L*

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MELTWLCNPL IKNLDKEFEM DTNGSLGANN WARSSSLTSD SMSFPGFGLQ NNQPKWDDPS  60
NSDYGIRAEV PFKDFNQPSQ TQSPLPCNSN NEIEIPNQEN CHLNESSQNS ALQDWDPNVM  120
LNNLSFLEEK IHQLQDVVHL IVRQKGIGQP TELVTQEQQL ITTDLTSIII QLISTAGSLL  180
PSVRHNLANT ASLFGQIDQL RGTTIPSGTG GSSSCIQPEN NGGKKMSDQS MQTDLPNNCE  240
MEPNYNVVEQ ELKDEEDVDD GENLAPGSYE ILQLEKEEIL APHTHFCTIC GKGFKRDANL  300
RMHMRGHGDE YKTPAALAKP HKESGSPKLI KRYSCPYPGC KRNKDHKKFQ PLKTILCVKN  360
HYKRTHCDKS YTCSRCNTKK FSVMADLKTH EKHCGKDKWL CSCGTTFSRK DKLFGHIALF  420
QGHTPAIPLD DAKGVAEPPN HDSKENSKVG NVQFSFGSSP SSNGNEVENV MDVKGNCDDP  480
ISFFSSLNFD NSFGGFNEFT RPLFDDSEGS FSFGIPGSFK SDGVSSPDNL L*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g11280.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014516882.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Refseq	XP_022642115.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Swissprot	Q9C8N5	1e-172	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A1S3VF95	0.0	A0A1S3VF95_VIGRR; protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRING	XP_007151889.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5340	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-161	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]