PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g11120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 330aa    MW: 36648.4 Da    PI: 4.8591
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g11120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.35.6e-4461331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l pGfrFhP+  elv ++Lk+kv gkk+    +i+e+diyk+ PwdLp k +++++e ewyfF++ +kky +g r +rat+ gyWkatg+d++v
  Vradi01g11120.1   6 LKPGFRFHPSGVELVLYFLKRKVMGKKFFG-GAIAELDIYKYAPWDLPaKsCLRTGELEWYFFCPLEKKYGSGCRMKRATEIGYWKATGRDRPV 98 
                      579************************887.88**************95357777888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++vg  +tL+f+kg++pkge+t+Wvmhe rl
  Vradi01g11120.1  99 QY-NNKTVGKIRTLIFHKGKSPKGERTNWVMHEHRL 133
                      *9.9999**************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-533156IPR003441NAC domain
PROSITE profilePS5100551.4836156IPR003441NAC domain
PfamPF023651.7E-208133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAVSRLKPGF RFHPSGVELV LYFLKRKVMG KKFFGGAIAE LDIYKYAPWD LPAKSCLRTG  60
ELEWYFFCPL EKKYGSGCRM KRATEIGYWK ATGRDRPVQY NNKTVGKIRT LIFHKGKSPK  120
GERTNWVMHE HRLEDKDLAD KGIAQNSYVV CKVFEKEGLG PRNGAQYARP FNEEEWSDEE  180
LEIPCTASTA PVPILPMTSD ASVPKDNPVP ASGCTSCLSR SMPLPGTVDP SDPNDQVVNN  240
DDEDILRMND ISQDGDKLFE KADNDQENIT GGVPPLAELF VGLDAYLDAH HAGISSGQNA  300
EFSANGMITT DDVWSLDFIE LSDLDISLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-40615720169NAC domain-containing protein 19
3swm_B3e-40615720169NAC domain-containing protein 19
3swm_C3e-40615720169NAC domain-containing protein 19
3swm_D3e-40615720169NAC domain-containing protein 19
3swp_A3e-40615720169NAC domain-containing protein 19
3swp_B3e-40615720169NAC domain-containing protein 19
3swp_C3e-40615720169NAC domain-containing protein 19
3swp_D3e-40615720169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g11120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-180AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511311.10.0NAC domain-containing protein 82 isoform X1
SwissprotQ9FY821e-82NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A1S3UZ070.0A0A1S3UZ07_VIGRR; NAC domain-containing protein 82 isoform X1
STRINGXP_007159836.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.17e-90NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]