PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g10980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 139aa    MW: 15279.4 Da    PI: 9.5868
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g10980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-0881126447
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      W+  Ed  l++a k ++++   +W+++a+ ++ gR+   c  r+  +
  Vradi01g10980.1  81 WSSGEDIALLNALKVFPKDvsmRWEKVAAAVP-GRSKAACMRRFTEL 126
                      ********************************.*********99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.35273127IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-775127IPR009057Homeodomain-like
SuperFamilySSF466891.4E-1177128IPR009057Homeodomain-like
SMARTSM007175.3E-577129IPR001005SANT/Myb domain
PfamPF002493.5E-780126IPR001005SANT/Myb domain
CDDcd001674.29E-781127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEFLDEDARP RFVFQSAAAF GGRHGVESVI KKAKELGEKK VDDSDSYALF LKNRKALDKR  60
VVEENGGEDS VTVEKVVENG WSSGEDIALL NALKVFPKDV SMRWEKVAAA VPGRSKAACM  120
RRFTELKKGF RNAKAAAE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g10980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513065.12e-79dnaJ homolog subfamily C member 2
SwissprotQ9ASQ28e-48MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A1S3V4465e-78A0A1S3V446_VIGRR; dnaJ homolog subfamily C member 2
STRINGXP_007159816.13e-71(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-50MYB_related family protein