PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g10800.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 319aa    MW: 35079.5 Da    PI: 6.51
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g10800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-20143192255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae+Aa+a+++a ++++g
  Vradi01g10800.1 143 KYRGVRQRP-WGKWAAEIRDpF-----KaTRVWLGTFETAEDAARAYDQASLRFRG 192
                      8********.**********66.....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-33142201IPR001471AP2/ERF domain
CDDcd000181.40E-33143202No hitNo description
SuperFamilySSF541718.5E-23143201IPR016177DNA-binding domain
SMARTSM003802.6E-35143206IPR001471AP2/ERF domain
PfamPF008471.6E-13143192IPR001471AP2/ERF domain
PROSITE profilePS5103225.014143200IPR001471AP2/ERF domain
PRINTSPR003673.7E-12144155IPR001471AP2/ERF domain
PRINTSPR003673.7E-12166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPMMFSGLDR EREMSAMISA LTQVVSGEEH DHDHDHDDSL LHQNIDTSAI GGGGVDGFTI  60
TSNMDSGSIG PSSACSSYCG NSVPKRRREG DDTSDLPRGI SFPAISTYGV GESSRRMRRG  120
ENKVYDYEYR AEKVGMEEEP KRKYRGVRQR PWGKWAAEIR DPFKATRVWL GTFETAEDAA  180
RAYDQASLRF RGNKAKLNFP ENVRLRHQSP EPPPAAPLFS IASTTEPIVH TQPQGSHDSG  240
NFYEYCYSHV HEFPVSLYDQ VAVSSSLPAS QLQSSPSYSS SSTITSSQPS LLSPHATHLS  300
PWSSSAPHYT NTSHPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-24142203163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g10800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497641.10.0ethylene-responsive transcription factor ABR1
TrEMBLA0A1S3TV330.0A0A1S3TV33_VIGRR; ethylene-responsive transcription factor ABR1
STRINGGLYMA05G32040.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-32ERF family protein