PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g10460.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 369aa    MW: 42188 Da    PI: 7.0818
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g10460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.11.2e-1082111433
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                      +k +rr+++NReAAr+sR+R+ka++++Le 
  Vradi01g10460.1  82 DKTQRRLAQNREAARKSRLRRKAYVQQLES 111
                      699*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-479139IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.6E-782127No hitNo description
PfamPF001708.0E-883111IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.59E-783124No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
PfamPF141446.5E-29170244IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDASSSQFVS SRRMEVYDPI HQISMWEENF KSNANTLTAS TSIIEELDMK FDNQVQAQSE  60
EVSHGIFGTS VKYNQDHNRL VDKTQRRLAQ NREAARKSRL RRKAYVQQLE SCRLKLMQLE  120
QEVDHAKRQG LYIGDGLGSN NLGFAGSVNS GIATFKMEYE HWVEEQNRHI LEMRTALSSQ  180
IGDMQLGNLV QSIMNHYSKL FSMKSAAAKA DIFYVMSGMW MTTAERFFLW IGGFRPSELL  240
KVLIPLSGPL TEQQLFDTYG LEKSCQQAED ALSQGMEKLQ QMLADSVGRG HLVEGTHIPQ  300
MDTAMERLEA LVSFVNQADH LRQETLRQMY RILSIREIGQ FLLVLGEYFQ RLRALSKLWA  360
NRSREALP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g10460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-146AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492718.10.0transcription factor TGA4
RefseqXP_014493876.10.0transcription factor TGA4
RefseqXP_014494656.10.0transcription factor TGA4
RefseqXP_014521500.10.0transcription factor TGA4
RefseqXP_022641768.10.0transcription factor TGA4
SwissprotQ391621e-165TGA4_ARATH; Transcription factor TGA4
SwissprotQ392371e-165TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A1S3TJE80.0A0A1S3TJE8_VIGRR; transcription factor TGA4
STRINGXP_007159742.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-167bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]
  6. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]