PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g09720.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 348aa    MW: 39009.9 Da    PI: 6.1918
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g09720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.12.6e-3048101154
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                      kprl+Wtp+LHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQ  R
  Vradi01g09720.1  48 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQVQR 101
                      79*************************************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.83745105IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2746101IPR009057Homeodomain-like
SuperFamilySSF466893.4E-1447102IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-2148102IPR006447Myb domain, plants
PfamPF002498.1E-95099IPR001005SANT/Myb domain
PfamPF143797.3E-1292124IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MYYQQQQQQI AARNLHALRM HSHTERHMMM QGGNGACDSG LVLSTDAKPR LKWTPDLHER  60
FIEAVNQLGG ADKATPKTVL KLMGIPGLTL YHLKSHLQVQ RHLQLRIEAQ GKYLQAVLEK  120
AQETLGRQNL GAEGVEAAKV QLSELASRVS SQSLDTKFSE LKELQVLWPQ QTQDGQATEC  180
SMGSFLTYSE ESQRDRETHN MSLNLIAFNG PPFSVSKDCV EESMHLKPDL TLSEDVKQNM  240
MFLSSSSDGK VVKGDFLQEG PSSLLSMNVG VLEEEKFGRT TLSKEEGWKV RDSTETGRMA  300
VKLNHEKISP DYRLPNFEVK LDLNSHDDND ASSHCQQFDL NGFSWNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1947106160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1947106160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1947106160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1947106160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1947106160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1947106160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1947106160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1947106160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g09720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504569.10.0myb-related protein 2 isoform X2
TrEMBLA0A1S3UF350.0A0A1S3UF35_VIGRR; myb-related protein 2 isoform X2
STRINGXP_007151824.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.18e-80G2-like family protein