PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g09700.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 336aa MW: 38168.9 Da PI: 6.8553

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g09700.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.1	1.3e-56	17	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee++++yL++kv ++ +++ ++i e+d++k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ Vradi01g09700.1 17 LPPGFRFHPTDEEIITCYLTEKVLDRGFSA-TAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGLRTNRATQSGYWKATGKDKEIFK 109 79************************99.88***********99999************************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 k++lvg+kktLvfy+grapkgekt+Wvmhe+rle Vradi01g09700.1 110 GKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 144 99****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-62	14	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.198	17	168	IPR003441	NAC domain
Pfam	PF02365	2.9E-29	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MMEEPVVVNK GDEPLDLPPG FRFHPTDEEI ITCYLTEKVL DRGFSATAIG EADLNKCEPW 60 DLPKKAKMGE KDWYFFCQRD RKYPTGLRTN RATQSGYWKA TGKDKEIFKG KNNLVGMKKT 120 LVFYRGRAPK GEKTNWVMHE FRLEGKFACY NLPKAAKDEW VVCKVFHKSN TDVNKRVLPI 180 NPGIGLLRMN SIGEDLFDFS SLPPLVDPLF DQTSHNKHID NDFKGNFNSN NNPMGIGTSN 240 HNPLQNTISP FNVFQDYYIH QGKNSFQQCK KEQFSNTVVS ASQDTCLSND RNTDTSSVVS 300 KQDNMGRNKA LYEDLDQAPS SVATLSDLDC LWDDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-51	15	171	18	171	NAC domain-containing protein 19
3swm_B	2e-51	15	171	18	171	NAC domain-containing protein 19
3swm_C	2e-51	15	171	18	171	NAC domain-containing protein 19
3swm_D	2e-51	15	171	18	171	NAC domain-containing protein 19
3swp_A	2e-51	15	171	18	171	NAC domain-containing protein 19
3swp_B	2e-51	15	171	18	171	NAC domain-containing protein 19
3swp_C	2e-51	15	171	18	171	NAC domain-containing protein 19
3swp_D	2e-51	15	171	18	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g09700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU661922	0.0	EU661922.1 Glycine max NAC domain protein (NAC23) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027923069.1	0.0	NAC domain-containing protein 87-like
Swissprot	Q9FK44	1e-118	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A4D6LZC7	0.0	A0A4D6LZC7_VIGUN; Uncharacterized protein
STRING	XP_007151811.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-119	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]