PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g09400.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 213aa    MW: 23520.3 Da    PI: 10.3478
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g09400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20117166255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a++ a++k++g
  Vradi01g09400.1 117 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAMAYDVAALKFKG 166
                      7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-33116175IPR001471AP2/ERF domain
SMARTSM003806.2E-39117180IPR001471AP2/ERF domain
CDDcd000181.51E-23117175No hitNo description
SuperFamilySSF541717.85E-23117175IPR016177DNA-binding domain
PROSITE profilePS5103225.462117174IPR001471AP2/ERF domain
PfamPF008476.7E-14117166IPR001471AP2/ERF domain
PRINTSPR003677.9E-12118129IPR001471AP2/ERF domain
PRINTSPR003677.9E-12140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAREFNDVAT TNPYATIAIP STFSTLSLVV EVFNLDGFIG STEKKEAFNF PIPLTPSQNP  60
KEQASSSPFS NFLITTNHQN TTFFPTPHGQ ITTSKFINTQ DPSQATNQGN ADIRKRHYRG  120
VRQRPWGKWA AEIRDPKKAA RVWLGTFDTA EAAAMAYDVA ALKFKGNKAK LNFPERAHPN  180
LANPLWTSSS VAGYQSRSFA GFKSWSFVDA SH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-25116176465ATERF1
3gcc_A8e-25116176465ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g09400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-106AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505184.13e-85ethylene-responsive transcription factor ERF113
SwissprotQ9FH547e-41EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1S3UGV67e-84A0A1S3UGV6_VIGRR; ethylene-responsive transcription factor ERF113
STRINGXP_007151718.11e-53(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]