PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g09140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 72aa MW: 7944.85 Da PI: 9.3813 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 49.5 | 1.6e-15 | 1 | 46 | 38 | 83 |
TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 +LGfdk+s+t+eWL++++k+aikel+++++s++se a+s sss++ Vradi01g09140.1 1 MLGFDKASNTLEWLFNKSKRAIKELARSKNSTNSEEGAKSFSSSSD 46 8***************************777775542222222221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 17.548 | 1 | 25 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.4E-13 | 1 | 53 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MLGFDKASNT LEWLFNKSKR AIKELARSKN STNSEEGAKS FSSSSDSVSL QFSGLQIFGK 60 SWEECTNPRL H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g09140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 8e-68 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151756.1 | 7e-21 | hypothetical protein PHAVU_004G072100g | ||||
TrEMBL | V7C394 | 2e-19 | V7C394_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151756.1 | 3e-20 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 4e-10 | TCP family protein |