PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g08880.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 284aa    MW: 31093.6 Da    PI: 4.8346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g08880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.52e-193382255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Vradi01g08880.1 33 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 82
                     588******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-213390IPR016177DNA-binding domain
CDDcd000181.71E-313389No hitNo description
PROSITE profilePS5103221.2063390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-293389IPR001471AP2/ERF domain
SMARTSM003806.6E-343396IPR001471AP2/ERF domain
PRINTSPR003671.1E-83445IPR001471AP2/ERF domain
PfamPF008472.7E-123482IPR001471AP2/ERF domain
PRINTSPR003671.1E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSSYKSSPSS SKTKKKQTTT QDHQQHETVW GGRYLGVRRR PWGRYAAEIR DPSTKERHWL  60
GTFDTAEEAA LAYDRAARSM RGPRARTNFV YPDTQPGSSV TTILSPDEQT QTQIQIHQVQ  120
EDLSSLLNPN LFSQPDPNPQ FSLGGYSGVT NTPTFSTTEV VSSGGYSYSY GYTEGGSNVE  180
DSHSHSHFNL FDDGETQLPP LPPDITSSIA YETGHGLYGD GVGFSDPSFS LTDTGSSYPF  240
SGFESGDYVV HSPLFSAMPP VSDNVAMGHE DFDLGSSSYF FRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-203489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-203189362ATERF1
3gcc_A1e-203189362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g08880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510399.10.0ethylene-responsive transcription factor LEP
TrEMBLA0A1S3UWZ10.0A0A1S3UWZ1_VIGRR; ethylene-responsive transcription factor LEP
STRINGXP_007151705.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-30ERF family protein