PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g08230.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 274aa MW: 30455.2 Da PI: 9.0253

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g08230.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	54.9	1.9e-17	203	253	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r +r++kNRe+A rsR+R++a+++eLe kvk+Le+eN++L+ +l+e++k Vradi01g08230.1 203 RRHKRMIKNRESAARSRARRQAYTQELEIKVKQLEEENERLR-RLNEIEKAL 253 699***************************************.999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-14	196	245	No hit	No description
SMART	SM00338	3.9E-15	199	267	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.312	201	245	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.7E-13	203	248	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-10	203	248	No hit	No description
PROSITE pattern	PS00036	0	206	221	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGSQGGAVQE ANTTTPLVRQ GSLYNLTLDE VHNQIGNLGK PLGCMNLDEL LKSVYSADMQ 60 DGQAASDSSL NPQGSLTLSR DLSRKTVDEV WRDMQLKKDE KTQKRKPTLG EMTLEDFLVK 120 AGVFADSNGG SSQHGHWMQY QHSSVQHQNM VGGYVAGHAI QQPFVLDASY SEPASVIGAL 180 SDTQTPCRKR LASGDVVEKT VERRHKRMIK NRESAARSRA RRQAYTQELE IKVKQLEEEN 240 ERLRRLNEIE KALPSVPPPE PKQQLRRTSS AIF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g08230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014513883.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_022640946.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_022640948.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-94	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A1S3V6A8	0.0	A0A1S3V6A8_VIGRR; ABSCISIC ACID-INSENSITIVE 5-like protein 2
STRING	XP_007151513.1	1e-161	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-79	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]