PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g08130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GeBP
Protein Properties Length: 298aa    MW: 34055.3 Da    PI: 5.0519
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g08130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57388.67.8e-2886184297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksg.kepsfskehdqkifels 92 
                      lfqr+wseeDe++lL+G+++f  ktg++p    d++af +f+kks+++++s++ql  Ki+r+KkKf++ ++k+k+g   p + ++hd+  f l 
  Vradi01g08130.1  86 LFQRIWSEEDELSLLKGILEFILKTGQEPLYhwDVNAFPNFIKKSLHVEFSRHQLRAKIQRIKKKFETYEEKKKKGlARPWLMSPHDRALFALY 179
                      69*************************77554599********************************999986666267999************ PP

           DUF573  93 kkiWg 97 
                      kkiW 
  Vradi01g08130.1 180 KKIWV 184
                      ****5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.7E-2487183IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTKKPKQRPV PVEDPSTPSS SESEEDDDRT HSSQQHAAAA QVSSFEEEDD SSEEEDEKQA  60
EAPSPSVAND ETEEDGKKSG GQAKVLFQRI WSEEDELSLL KGILEFILKT GQEPLYHWDV  120
NAFPNFIKKS LHVEFSRHQL RAKIQRIKKK FETYEEKKKK GLARPWLMSP HDRALFALYK  180
KIWVEWPDGL RGKPEPLVTK TQKKESEAKA EVPSQPELLA PESGDVSLLY SNISCFKELD  240
EDEMKRGLTL IGESKRKELE RRWKVLQYSE MELLANRTLL MGEQIKLVSE ALQSSNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g08130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505549.11e-173probable transcription factor At1g11510
RefseqXP_022640924.11e-173probable transcription factor At1g11510
TrEMBLA0A1S3UHX81e-172A0A1S3UHX8_VIGRR; probable transcription factor At1g11510
STRINGXP_007151503.18e-92(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-17DNA-binding storekeeper protein-related transcriptional regulator