PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g07820.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 366aa    MW: 40941.8 Da    PI: 5.1434
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g07820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.4e-062767438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     r+C+++ + + + +C+ ++ +lC +C    H+       H+
  Vradi01g07820.1 27 RVCDTCRSAPCIVYCHADSAYLCSSCDARVHEAnrvasrHE 67
                     68**************************9996555666665 PP
2zf-B_box28.33.6e-0969114342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++ + C+ +   lC +C   +H+       H +vp+
  Vradi01g07820.1  69 VWVCEACERAPAAFLCKADAASLCTSCDADIHSAnplasrHHRVPI 114
                      689*****************************66899999877775 PP
3CCT70.25.2e-24296339144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eK+ktRkFeKkirY+sRKa+Ae+RpR+KGrF+k++
  Vradi01g07820.1 296 REARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRT 339
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.0E-82471IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1962471IPR000315B-box-type zinc finger
CDDcd000217.45E-72771No hitNo description
PROSITE profilePS5011910.99367114IPR000315B-box-type zinc finger
PfamPF006433.4E-768114IPR000315B-box-type zinc finger
CDDcd000211.66E-770114No hitNo description
SMARTSM003361.7E-872114IPR000315B-box-type zinc finger
PfamPF062038.1E-18296338IPR010402CCT domain
PROSITE profilePS5101716.827296338IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MPTESTWTQM YTCLQVVPPL HSSTWSRVCD TCRSAPCIVY CHADSAYLCS SCDARVHEAN  60
RVASRHERVW VCEACERAPA AFLCKADAAS LCTSCDADIH SANPLASRHH RVPILPILGP  120
LLVEPDHEPE HGFVNEVEEE EGEVFDEYDD EIEAASWLLP HPVKGNQEQE NGLLYGDEYL  180
DNLVDCNSCG HHNQFSNVFQ QQQNYNTVPQ NYAVVPVQVL QQSQHFQPGL EFDSSKAGFS  240
YDGSISQSVS VSSMEVGVVP ESTISDISVS YSKSPIGTSD LFPPLPMPSH LTPMDREARV  300
LRYREKKKTR KFEKKIRYAS RKAYAETRPR IKGRFAKRTD VEAEVDQMLS TTLFNEVGGT  360
IFPSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g07820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509740.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-117COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A1S3UUN70.0A0A1S3UUN7_VIGRR; zinc finger protein CONSTANS-LIKE 2
STRINGXP_007151441.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.15e-81CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]