PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g07670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 24451.1 Da PI: 4.4571 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.4e-19 | 42 | 89 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l Vradi01g07670.1 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLL 89 789******.7*********33....35*********************9866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.70E-27 | 41 | 97 | No hit | No description |
Pfam | PF00847 | 1.1E-13 | 42 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-24 | 42 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-28 | 42 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-17 | 42 | 95 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.215 | 42 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MARKRKVGEV VEERNICEGT MAWDEMMKQA AALGGVQRAR KRFVGVRQRP SGRWVAEIKD 60 TIQKIRVWLG TFDTAEEAAR AYDEAACLLR DYSTSSNDFI NNSAQIDYIT SSFESCLTED 120 TKVDVQYKTS IVTPQTSSTD DSNSGVEDSE EEGTDFRFLD NIAPPGYYSP FEMAEEMEEP 180 VEAENYGGDE PSMLRAMMKR MTYERNKHEG KRNNN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g07670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495794.1 | 8e-65 | dehydration-responsive element-binding protein 2F-like | ||||
TrEMBL | A0A1S3TPV5 | 2e-63 | A0A1S3TPV5_VIGRR; dehydration-responsive element-binding protein 2F-like | ||||
STRING | XP_007151265.1 | 3e-55 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28461 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-19 | related to AP2 11 |