PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g07310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 262aa MW: 28750.5 Da PI: 9.714 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.4 | 6.7e-31 | 50 | 128 | 2 | 74 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......e 74 g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ Vradi01g07310.1 50 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslV 128 689*************************************************************777775554432221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-28 | 52 | 193 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.097 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MINSTKEADF PLKQEGVSSS DHEKAKASSS SSSQWLKLKD PRIVRVSRAF GGKDRHSKVC 60 TVRGLRDRRV RLSVPTAIHL YDLQDRLGLN QPSKVVDWLL NAAKHEIDEL PPLPIPPGNF 120 TLGYPSLVAC NEVSTSREGE VAQWANHGFV NQTDIHSINV VPIPSTLALS TGSTTPQILV 180 CPSGATQPYF PSHVAAMEMN ARQLNHYQML TSASQNLFAN SSQQLMSQSG KVPFSLVRPK 240 LFHSPNSSES HSRKDQDFPS K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g07310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511156.1 | 6e-92 | transcription factor TCP13 | ||||
Refseq | XP_014511237.1 | 6e-92 | transcription factor TCP13 | ||||
Refseq | XP_022640526.1 | 6e-92 | transcription factor TCP13 | ||||
TrEMBL | A0A1S3UYK0 | 1e-90 | A0A1S3UYK0_VIGRR; transcription factor TCP13 | ||||
STRING | GLYMA19G03786.2 | 5e-87 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 8e-40 | plastid transcription factor 1 |