PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g07040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22741.5 Da PI: 9.539 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.6 | 4.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rienk+nrqvtfskRr g+lKKA+ELSvLCdaeva+i+fss+gkl+ yss Vradi01g07040.1 9 ERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSSRGKLFQYSS 59 69***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.46E-40 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 2.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSS RGKLFQYSST 60 DINKIVERYR QCRYSKLQTG DSSELESQSS YHEFLKLRAK YESLERTQSY TYLQVRKMED 120 LNKQLESKEK DEFSSLILEN NNFFQLHATQ ADQFESGTTL NTCRFQQQDV GSKERAVDTR 180 KEGNHSTHTK SNGWL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-24 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 2e-24 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 2e-24 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 2e-24 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g07040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093681 | 1e-130 | BT093681.1 Soybean clone JCVI-FLGm-14A18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014509646.1 | 1e-129 | truncated transcription factor CAULIFLOWER D isoform X1 | ||||
Swissprot | Q6EU39 | 1e-46 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | A0A1S3UU87 | 1e-128 | A0A1S3UU87_VIGRR; truncated transcription factor CAULIFLOWER D isoform X1 | ||||
STRING | GLYMA16G32540.1 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13223 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 1e-43 | MIKC_MADS family protein |