PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g07000.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 988aa MW: 110717 Da PI: 7.4067

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g07000.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.5	1.9e-09	225	280	21	76
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 + rgk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e+ Vradi01g07000.1 225 ITRGKTRADKDKEVAEFLKRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQI 280 45789999999**************************************9965544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.510.10	3.6E-9	847	972	No hit	No description
SuperFamily	SSF56112	3.42E-17	848	969	IPR011009	Protein kinase-like domain
CDD	cd00180	8.29E-12	850	970	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence Send to blast
MFAFACCDPL YFVTFPFEDM AEVPSSIYQG NKRIQNPFEN MPIHHHQQLS PVVVVTGAPP 60 FISSPLYVSS GASSSPYEPQ FETLNPKRPR YSGQWKQLLP SPPAQPKQSQ MAMLPTTESS 120 PSPTTHTSSN PQQPQTQTAS SSDTSSSPTH SLPLLSGGSG QEGSKQEGEQ VHQQLRKGKY 180 VSPVWKPNEM LWLARAWKEQ YQGGGGGGSE SSSRAEQQHQ AELGITRGKT RADKDKEVAE 240 FLKRHGVNRD AKTAGTKWDN MLGEFRKVYE WERGGEREQI GKSYFRLSPY ERKLHRLPAS 300 FDEDVFEELA QFMGSRMRSS QGRAGSSFVS GDEARTALAA ARALPPPPRP FKDDETPLSG 360 TTKQLAITSG VEPFFHGSRG GLLGLDTLLD VSGSSSSSKE LRRIGKIRMT WEESVSLWAE 420 EGEIHRGRVR LQSSSFLNAD ELTCFDEAMV PCPMEYFEDG PLKGFSVDRF VSGQQVKVFG 480 RRKSSPASDS SGFAERVQLP SKALPIRSIA TLDFRDPTEY YMECLLRASP QTLPSLYELR 540 RHLQEPPPED LRFPLRRDVY EELPQGKELF FTTTPEPLDC RTIMYDIVGP IIRIHNPSLS 600 LAASSSRDSF IPLWDECINR VIQKFCPEEL TLIRKPTSPP PESTNQSMLQ DQWPNVTGFV 660 NNYCLWRGEE THQLKESQPN PSTTLVGKLM WTYMDLPYIL GYYAVANTVT FCALSRSQDG 720 IINRTDLHEV NLTTPVEKLK ALVPCFRIGL LLALLSKRCA SISNCKGFTY SDFERVCYGN 780 GVVTEVTPST CTRVFMEKRK WMAVKEVYEI LDHRIPHAEV LVGFSERELG LSFKPRGCRV 840 KPGNCEELVE ALKFVTKAMV ALHDLSFMHR DLKWEKVMRR RDREEWFVCG FDEAAGAPEL 900 KGHVSGTRGG HAPEMERGLH GVKVDVWGVG NLIRTCGLGG VPKMLRELQN RCMEQNPEQR 960 PTAADCYHHL LQLQSSLSAA VGGVMMM*

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence Send to blast

MFAFACCDPL YFVTFPFEDM AEVPSSIYQG NKRIQNPFEN MPIHHHQQLS PVVVVTGAPP  60
FISSPLYVSS GASSSPYEPQ FETLNPKRPR YSGQWKQLLP SPPAQPKQSQ MAMLPTTESS  120
PSPTTHTSSN PQQPQTQTAS SSDTSSSPTH SLPLLSGGSG QEGSKQEGEQ VHQQLRKGKY  180
VSPVWKPNEM LWLARAWKEQ YQGGGGGGSE SSSRAEQQHQ AELGITRGKT RADKDKEVAE  240
FLKRHGVNRD AKTAGTKWDN MLGEFRKVYE WERGGEREQI GKSYFRLSPY ERKLHRLPAS  300
FDEDVFEELA QFMGSRMRSS QGRAGSSFVS GDEARTALAA ARALPPPPRP FKDDETPLSG  360
TTKQLAITSG VEPFFHGSRG GLLGLDTLLD VSGSSSSSKE LRRIGKIRMT WEESVSLWAE  420
EGEIHRGRVR LQSSSFLNAD ELTCFDEAMV PCPMEYFEDG PLKGFSVDRF VSGQQVKVFG  480
RRKSSPASDS SGFAERVQLP SKALPIRSIA TLDFRDPTEY YMECLLRASP QTLPSLYELR  540
RHLQEPPPED LRFPLRRDVY EELPQGKELF FTTTPEPLDC RTIMYDIVGP IIRIHNPSLS  600
LAASSSRDSF IPLWDECINR VIQKFCPEEL TLIRKPTSPP PESTNQSMLQ DQWPNVTGFV  660
NNYCLWRGEE THQLKESQPN PSTTLVGKLM WTYMDLPYIL GYYAVANTVT FCALSRSQDG  720
IINRTDLHEV NLTTPVEKLK ALVPCFRIGL LLALLSKRCA SISNCKGFTY SDFERVCYGN  780
GVVTEVTPST CTRVFMEKRK WMAVKEVYEI LDHRIPHAEV LVGFSERELG LSFKPRGCRV  840
KPGNCEELVE ALKFVTKAMV ALHDLSFMHR DLKWEKVMRR RDREEWFVCG FDEAAGAPEL  900
KGHVSGTRGG HAPEMERGLH GVKVDVWGVG NLIRTCGLGG VPKMLRELQN RCMEQNPEQR  960
PTAADCYHHL LQLQSSLSAA VGGVMMM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g07000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014495569.1	0.0	uncharacterized protein LOC106757411
TrEMBL	A0A1S3TP91	0.0	A0A1S3TP91_VIGRR; uncharacterized protein LOC106757411
STRING	XP_007152366.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-07	Trihelix family protein