PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g05760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 676aa MW: 74420.5 Da PI: 6.6891 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3e-20 | 25 | 80 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++lgL rq+k+WFqNrR+++k Vradi01g05760.1 25 KKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMK 80 678899***********************************************998 PP | |||||||
2 | START | 28.2 | 4e-10 | 224 | 312 | 2 | 82 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 +a a++e +++ + +ep+W+k + + ++ d++ + f+++++ ++ea+r+sgvv+m+ +lv ++d + +W e ++ + t+ Vradi01g05760.1 224 IASNAMEEMIRLLQTNEPLWMKGPdgrDVLDLDTYERMFPKANGhmknpnVHVEASRDSGVVIMNGLTLVDMFMDPN-KWMELFPTVVTI 312 67889*******************99999999*******999999********************************.***999876665 PP | |||||||
3 | START | 90.6 | 3.2e-29 | 311 | 407 | 110 | 206 |
EEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXX CS START 110 vfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqr 202 +++R+i+q ++g w+ivdvS d +q+++ ++ R+++lpSg i++++ng+skvtw+ehv++++++p h l+r ++ sg+a+ga++w+ tlqr Vradi01g05760.1 311 TIARTIEQIEQGLWAIVDVSYDFPQDNQ-FAPQFRSHRLPSGVFIQDLPNGYSKVTWIEHVEVEDKTPvHRLYRNMIYSGIAFGAQRWLTTLQR 403 689************************9.8**************************************************************** PP XXXX CS START 203 qcek 206 ce+ Vradi01g05760.1 404 MCER 407 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.52E-21 | 5 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 13 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.139 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.0E-19 | 23 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.66E-19 | 24 | 83 | No hit | No description |
Pfam | PF00046 | 8.3E-18 | 25 | 80 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 28.695 | 214 | 410 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.36E-22 | 215 | 408 | No hit | No description |
CDD | cd08875 | 1.69E-80 | 218 | 406 | No hit | No description |
SMART | SM00234 | 2.2E-16 | 223 | 407 | IPR002913 | START domain |
Pfam | PF01852 | 7.1E-25 | 310 | 407 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.14E-26 | 428 | 667 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MEYGSGSPGD LHHHHDGSSD SQRRKKRYHR HTANQIQRLE SMFKECPHPD EKQRMQLSRE 60 LGLAPRQIKF WFQNRRTQMK AQHERADNSA LRQENDKIRC ENIAIREALK NVICPSCGGP 120 PINDDCYFDE QKLRLENAQL KEELDRVSSI AAKYIGRPIS QLPPVQPIHI SSLDLSMGSF 180 ASQGLGGPSL DLDLLPGSSS SMPNVPPFQP ACLSDMDKSL MSDIASNAME EMIRLLQTNE 240 PLWMKGPDGR DVLDLDTYER MFPKANGHMK NPNVHVEASR DSGVVIMNGL TLVDMFMDPN 300 KWMELFPTVV TIARTIEQIE QGLWAIVDVS YDFPQDNQFA PQFRSHRLPS GVFIQDLPNG 360 YSKVTWIEHV EVEDKTPVHR LYRNMIYSGI AFGAQRWLTT LQRMCERIAC LMVTSNSTRD 420 LGGVIPSPEG KRSMMKLAQR MVTNFCASIS ASAGHRWTTL SGSGMNEIGV RVTVHKSTDP 480 GQPNGVVLSA ATTIWLPIPP QTVFNFFKDE KKRPQWDVLS NGNAVQEVAH IANGAHPGNC 540 ISVLRAFNTS QNNMLILQES CVDSSGSLVV YCPVDLPAIN IAMSGEDPSY IPLLPSGFTI 600 SPDGQGEQDG GGASSSTSSG RVMGGSGGSL ITVAFQILVS SLPSAKLNFE SVTTVNSLIG 660 NTVQQIKAAL NCPSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g05760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152598.1 | 0.0 | hypothetical protein PHAVU_004G143500g | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | V7C345 | 0.0 | V7C345_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152598.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |