PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g04600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 28602.2 Da PI: 8.8688 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.2 | 1.2e-47 | 5 | 121 | 11 | 129 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104 deel+++yL+kkv++++++ ++i+ vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++ +g lvg+kk Vradi01g04600.1 5 DEELITCYLTKKVSDSSFTS-KAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFR-TGVLVGMKK 96 9****************999.88***************988999****************************************.99******* PP NAM 105 tLvfykgrapkgektdWvmheyrle 129 tLvfy+grapkgek++Wvmheyrle Vradi01g04600.1 97 TLVFYRGRAPKGEKSNWVMHEYRLE 121 ***********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.023 | 1 | 141 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-22 | 5 | 120 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.03E-55 | 5 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGEGDEELIT CYLTKKVSDS SFTSKAIAVV DLNKSEPWDL PGKASMGEKE WYFFSLRDRK 60 YPTGLRTNRA TESGYWKTTG KDKEIFRTGV LVGMKKTLVF YRGRAPKGEK SNWVMHEYRL 120 ENKHHLRPSK DEWVVCRVFQ KSLLVKKPQQ TNSSQPDSPC DTVSVVNEFG DVELPNLNSI 180 ANSSGGLTEN ISGQTFMNAD ISNSVNTSMN LAMNWAVANE VHQHLLQKFK NVCHSSNNNR 240 SNHSIWTPFG ESV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-49 | 5 | 141 | 27 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-49 | 5 | 141 | 27 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-49 | 5 | 141 | 27 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-49 | 5 | 141 | 27 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-49 | 5 | 141 | 30 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-49 | 5 | 141 | 30 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-49 | 5 | 141 | 30 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-49 | 5 | 141 | 30 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-49 | 5 | 141 | 30 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-49 | 5 | 141 | 30 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-49 | 5 | 141 | 30 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-49 | 5 | 141 | 30 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-49 | 5 | 141 | 27 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-49 | 5 | 141 | 27 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g04600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-134 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507751.1 | 1e-163 | NAC domain-containing protein 92 | ||||
Swissprot | O04017 | 3e-73 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A1S3UNW1 | 1e-162 | A0A1S3UNW1_VIGRR; NAC domain-containing protein 92 | ||||
STRING | XP_007152755.1 | 1e-147 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4946 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 5e-90 | NAC domain containing protein 58 |