PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g04550.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 288aa    MW: 32308.4 Da    PI: 7.2962
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g04550.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248.3e-084489342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     +r C+ + + +++++C  ++ +lC+ C    H+       H++v+l
  Vradi01g04550.1 44 ARACESCLKVRARWYCAADDAFLCHGCDNMVHSAnqlarrHERVKL 89
                     578******99*********************66888999999875 PP
2CCT67.73.1e-23238281144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Vradi01g04550.1 238 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 281
                      9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.9E-74289IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2674289IPR000315B-box-type zinc finger
PfamPF006439.5E-64489IPR000315B-box-type zinc finger
CDDcd000212.53E-64589No hitNo description
PfamPF062035.6E-18238280IPR010402CCT domain
PROSITE profilePS5101715.993238280IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNIKSPANEH CDETKSAVLF AAKNQFPSVT DEMKEASALG ARTARACESC LKVRARWYCA  60
ADDAFLCHGC DNMVHSANQL ARRHERVKLQ TASSKVNYSV TFKQNNKLLC RVPVFDAELC  120
SVYNEVKEEV LAGEEVFDLD NFSSELLPSD MDLAEFAADE QEEEASTVGT DKKDMFLRLN  180
YEDVISAWAS QGSPWTTGTP PNFNSDDCWP DFLGSNGGDV QCCYGEMKSL RGHADGGREA  240
RVSRYREKRR TRLFAKKIRY EVRKLNAEKR PRMKGRFVKR TSAALPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248264RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g04550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-124AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152761.11e-107hypothetical protein PHAVU_004G157300g
SwissprotQ8RWD08e-37COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A371H9261e-119A0A371H926_MUCPR; Zinc finger protein CONSTANS-LIKE 16 (Fragment)
STRINGXP_007152761.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-39B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]