PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g04230.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 243aa    MW: 27803.9 Da    PI: 4.5216
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g04230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.62.1e-1564149186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W+++e+ +L+e+  ++  +l+r++l+   W ev++k+ +e + ers +qC++ +++l+++ykk+k+ + +     s ++pyf++++
  Vradi01g04230.1  64 EWSEHETFVLLEVWGDKFLQLGRNSLRSEEWHEVAEKVsEELKAERSVTQCRSVLDKLKRKYKKEKTKMDEM-GMGSCKWPYFKKMD 149
                      5*************************************788999**************************97.666779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-1963151No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
DENEHEDFND DNDEGENGYD ENDIVGYPRI PKKRKVVVAP GSYEFAPRFK LSYGSRGSGS  60
SGEEWSEHET FVLLEVWGDK FLQLGRNSLR SEEWHEVAEK VSEELKAERS VTQCRSVLDK  120
LKRKYKKEKT KMDEMGMGSC KWPYFKKMDM LMASSARQEY GLACGVDSGD KRQQMMELEK  180
MRLDFNRELE LQKKQILERA QAEIAKIQEG DEEDTDTSTE NLIDNPGKDG DILIECPSFG  240
GT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g04230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027924384.12e-98trihelix transcription factor ASIL2
RefseqXP_027924385.12e-98trihelix transcription factor ASIL2
RefseqXP_027924386.12e-98trihelix transcription factor ASIL2
RefseqXP_027924387.12e-98trihelix transcription factor ASIL2
TrEMBLA0A4D6LU831e-98A0A4D6LU83_VIGUN; Uncharacterized protein
STRINGXP_007152813.12e-90(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-35Trihelix family protein