PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g03990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CPP | ||||||||
Protein Properties | Length: 596aa MW: 64040.6 Da PI: 7.5117 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.8 | 1.2e-14 | 92 | 131 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+skClk+YCeCfa+g +C+ C+C +C+N+ e+ Vradi01g03990.1 92 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVEN 131 89**************************.********9875 PP | |||||||
2 | TCR | 50.9 | 3.1e-16 | 176 | 215 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Vradi01g03990.1 176 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 215 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.2E-17 | 91 | 131 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.003 | 92 | 216 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.0E-11 | 93 | 128 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 176 | 217 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-12 | 179 | 214 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MGEGEGGDIA PKNALSSEVV PPAVTSTAAL EVPAKKLARQ LDFTGAPEHP QQQPVAVLPL 60 PPQAPHSRIG KPESPKSRSR PNFEMKDATP KKQKQCNCKH SKCLKLYCEC FASGIYCDGC 120 NCVNCFNNVE NEAARREAVE ATLERNPNAF RPKIASSPHG TRDSREEAGE VLILGKHNKG 180 CHCKKSGCLK KYCECFQANI LCSENCKCMD CKNFEGSEER QALFHGDQNN MAYIQQAANA 240 AITGAIGSSG YSSPPVSKKR KGQELFFWPT AKDPSISKLG QQVNHVRGPA PSSSLSPVSG 300 ARVGTATLGP SKFMYRSLLA DIIQPQHLKE LCSVLVLVSG QAAMTLSDQK ILTEKHAEDQ 360 TETSLASSSQ ERLPPSQKEG HVEKTVADDC SSANQTDKIS PDDSSSDGAD VPKGRPMSPG 420 TLALMCDEQD TMFMTAASPI GPMAHACNTS SQFPYGQGMT EVYAEQERIV LTKFRDFLNR 480 VITMGEINGK LILSSFQISD ATSLTLHIGG LTLVLNTLLY ETKCSSLARN ELENQKDPII 540 NGVGNANSVI VRQHAASSNG VTKPSVSPLA TTSTRMIPGN ISENGEAKVK IEKDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-32 | 84 | 225 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 4e-32 | 84 | 225 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g03990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014518104.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A1S3VJ20 | 0.0 | A0A1S3VJ20_VIGRR; protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
STRING | XP_007152845.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-169 | Tesmin/TSO1-like CXC domain-containing protein |