PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g03740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 1176aa    MW: 130818 Da    PI: 4.6707
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g03740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.6e-111071652783
                      ---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
               B3  27 ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFk 83 
                      +++ +++++++++d+ g ++e+ l+     +  + yvl +GW +F++++gL +gD v ++
  Vradi01g03740.1 107 EEDVRKGIEVKVYDRGGHEFEMMLKKwvIDSN-QfYVLNRGWFSFCNEHGLGQGDLVALR 165
                      34446899****************66343444.35*********************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.63E-1199172IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-10101172IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-8110166IPR003340B3 DNA binding domain
CDDcd100172.55E-10111165No hitNo description
PROSITE profilePS508638.557115187IPR003340B3 DNA binding domain
SMARTSM003322.8E-52229517IPR001932PPM-type phosphatase domain
SuperFamilySSF816061.83E-48239384IPR001932PPM-type phosphatase domain
PROSITE profilePS5174639.577250519IPR001932PPM-type phosphatase domain
Gene3DG3DSA:3.60.40.106.4E-64252520IPR001932PPM-type phosphatase domain
PfamPF004811.2E-33258498IPR001932PPM-type phosphatase domain
CDDcd001435.76E-52260519No hitNo description
PROSITE patternPS010320265273IPR000222PPM-type phosphatase, divalent cation binding
SuperFamilySSF816061.83E-48416521IPR001932PPM-type phosphatase domain
Gene3DG3DSA:2.60.120.103.1E-30562687IPR014710RmlC-like jelly roll fold
SuperFamilySSF512062.23E-26563686IPR018490Cyclic nucleotide-binding-like
PROSITE profilePS5004226.86576685IPR000595Cyclic nucleotide-binding domain
CDDcd000385.27E-21576685No hitNo description
SMARTSM001001.0E-12576699IPR000595Cyclic nucleotide-binding domain
PfamPF000273.7E-20595686IPR000595Cyclic nucleotide-binding domain
PRINTSPR001031.1E-7597611No hitNo description
PRINTSPR001031.1E-7612626No hitNo description
PRINTSPR001031.1E-7647656No hitNo description
SuperFamilySSF512069.45E-15693752IPR018490Cyclic nucleotide-binding-like
Gene3DG3DSA:2.60.120.103.2E-16694831IPR014710RmlC-like jelly roll fold
SMARTSM001007.1E-5702840IPR000595Cyclic nucleotide-binding domain
CDDcd000381.02E-8702826No hitNo description
PROSITE profilePS5004212.038702842IPR000595Cyclic nucleotide-binding domain
SuperFamilySSF512069.45E-15779837IPR018490Cyclic nucleotide-binding-like
PRINTSPR001031.1E-7821833No hitNo description
SuperFamilySSF561123.03E-428481148IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.207.9E-8856969No hitNo description
PROSITE profilePS5001125.7018631117IPR000719Protein kinase domain
SMARTSM002201.2E-178711117IPR000719Protein kinase domain
PfamPF000694.1E-328831117IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.103.5E-409701139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043169Molecular Functioncation binding
Sequence ? help Back to Top
Protein Sequence    Length: 1176 aa     Download sequence    Send to blast
MAGSSSNSGR AKSVVEGNKH AKEIQFNDEL HLEFILDAGI VKDCELSLPY GVQLTNDRWN  60
LFLPLLGFEE TLIGFLKEEE DVRKGIEVKV YDKGGHEFEM MLLKEEEEDV RKGIEVKVYD  120
RGGHEFEMML KKWVIDSNQF YVLNRGWFSF CNEHGLGQGD LVALRAFRHS ITDIINGDPV  180
VRTTDVGELA NFSPTSSDVE EGEIRDQLNQ LSITRDSEAG IRRLARVSAQ FLPPDGSRIV  240
KVPSGNFELR YSFLSQRGTS PNDHFFGVFD GHGEFGAQCS QFVKRKLCEN LLRNSKFRGD  300
PVEACHAAFL ATNSQLHADV LDDSMSGTTA ITVLVRGRTI FVANSGDSRA VIAERRGKEI  360
VAVDLSIDQT PFRSDELERV KLCGARVLTL DQIEGLKNPD VQCWGTEEGD DGDPPRLWVP  420
NGMYPGTAFT RSIGDSIAET IGVVANPEIV VFELTQDHPF FVLASDGVFE FLSSQSVVEM  480
AAKFKDPRDA CAAIVAESYR LWLQYETRTD DITVIIVHVN GLTESTVAQS ASYGDVLQKP  540
VPQVVEVTGS ESPSTFGWSA RNQRAHIEQA LHDHFLFRKL TDSQCHVLLD CMQRVEVEPG  600
DIIVKQGGEG DCFYVVGSGE FEVLATQEEK EGDVPRVLQR YTAEKLSCFG ELALMYNKPL  660
QASVRAVTKG TLWALKREDF RGILMSEFSN LSSLKLLRSV DLLSRLSILQ LSQISDSLSE  720
VSFSNGQTII DNNEILALYI IQKGCVKITF DSDLLTSPNA YSLKPDIQNE EEDVQSRTEL  780
SIEKPEGSYF GEWTLYGERI GSINAVAVGD VVCALLTKDK FESVIGSIQK ISQEDHKSKD  840
NSMELTGRNY DFSSLDKVQL SDLEWRKTLY STDCSEIGVA NLKESENLLT LKRFSKPKIK  900
RLGKESQVLK EKDLIKGLGS SASIPQVLCT CADSMYAGIL LNTHLACPLS SILSSPLSES  960
AARFCAASVV TALEDLHKNG VLYRGVSPDV LMLEQTGQIQ LVDFRFGKQL SGERTFTICG  1020
MADSLAPEIV LGKGHGFPAD WWALGVLIYF MLRGEMPFGS WRENELDTVA KIAKRKLHLP  1080
ESFSSETVDL ISKLLEVEEN NRLGSQGPDS VKSHPWFKGI DWEGIRSRTF PVPQEIISRI  1140
TQYLEVHSED CSTGYPGSPL QEVEELNVPE WLEDW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rdq_E7e-41848113328313cAMP-dependent protein kinase, alpha-catalytic subunit
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g03740.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439799.10.0PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1
SwissprotQ9SL760.0P2C19_ARATH; Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein
TrEMBLA0A4D6LVL40.0A0A4D6LVL4_VIGUN; Protein kinase A
STRINGXP_007152897.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1086322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.26e-10WRKY family protein
Publications ? help Back to Top
  1. Guan C,Rosen ES,Boonsirichai K,Poff KL,Masson PH
    The ARG1-LIKE2 gene of Arabidopsis functions in a gravity signal transduction pathway that is genetically distinct from the PGM pathway.
    Plant Physiol., 2003. 133(1): p. 100-12
    [PMID:12970478]
  2. Schweighofer A,Hirt H,Meskiene I
    Plant PP2C phosphatases: emerging functions in stress signaling.
    Trends Plant Sci., 2004. 9(5): p. 236-43
    [PMID:15130549]
  3. Xue T, et al.
    Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis.
    BMC Genomics, 2008. 9: p. 550
    [PMID:19021904]