PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g03390.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 284aa MW: 31850.2 Da PI: 8.6934

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g03390.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.4	1.2e-35	21	161	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ + Vradi01g03390.1 21 TGVKFDPTDQELI-EHLEAKVEAKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnecdlqGGE 112 7**********.99*****5553344444434666646******.555666799**************845555544337 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Vradi01g03390.1 113 TRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 161 78********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-37	19	180	IPR003441	NAC domain
PROSITE profile	PS51005	31.335	19	180	IPR003441	NAC domain
Pfam	PF02365	2.6E-16	21	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MPSLKSINCV DPSSALVADT TGVKFDPTDQ ELIEHLEAKV EAKNMKSHPL IDEFIPTIEG 60 EDGICYTHPE KLPGVTRDGL SRHFFHRPSK AYTTGTRKRR KIQNECDLQG GETRWHKTGK 120 TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ 180 TQPRQCNWSD RSATTGEGSG EPNNSSRRDS GSGSCSSKEI ATHRDEMSAV MCALNLIVDL 240 GKCIYGICTL CSSNNNIIIS LEEGLRLVWR NSSWVALQLK SKR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g03390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017437876.1	1e-154	PREDICTED: NAC domain-containing protein 73
Swissprot	Q9M0F8	1e-114	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A4D6LU64	1e-152	A0A4D6LU64_VIGUN; Uncharacterized protein
STRING	GLYMA01G00880.1	1e-152	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4520	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-117	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]