PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g03120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 277aa    MW: 30101.8 Da    PI: 9.2782
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g03120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.2e-14101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
  Vradi01g03120.1 101 PWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 145
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.106.6E-4320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.17494150IPR017930Myb domain
SuperFamilySSF466891.72E-1796149IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-1897148IPR006447Myb domain, plants
SMARTSM007171.2E-1098148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-1198144IPR009057Homeodomain-like
PfamPF002491.8E-11101145IPR001005SANT/Myb domain
CDDcd001671.99E-9101146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCSS FRATFVGVRL FGVQLHISNS SSLTMKKSFS MDSLPLLSSS  60
SSSFSSSRIS IDDHPEKASV SYLSDSDGLI VRPQDRKKGV PWTEEEHRTF LVGLEKLGKG  120
DWRGISRNYV TTRTPTQVAS HAQKYFIRLA TLNKKKRRSS LFDLVGGSSN CKSGDLVSPT  180
KSKGEIENDV TLSLLQAQET KTGEQKDSDD CCQDEAGADH EAVMWLHPQM KSSSNNSSAA  240
IPDLELTLSV SKGKAKTMEQ TKSTPGSFFL GPISVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g03120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-176AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511106.10.0transcription factor MYBS3
SwissprotQ7XC572e-52MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A1S3UYF00.0A0A1S3UYF0_VIGRR; transcription factor MYBS3
STRINGXP_007152917.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-51MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]