PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g02800.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 644aa    MW: 70810.5 Da    PI: 6.1511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g02800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.81.9e-0810323456
                     HHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox 34 AkklgLterqVkvWFqNrRakek 56
                     +++lgL  rq+k+WFqNrR+++k
  Vradi01g02800.1 10 SQELGLAPRQIKFWFQNRRTQMK 32
                     689*****************998 PP
2START1831.6e-571824032206
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      +a  a++el+++++ +ep+W ks     + +n+d + ++f++ ++       + ea+r+s+vv m++  lv  ++d + +W+e ++     a+t
  Vradi01g02800.1 182 IASNAMEELLRLVQTNEPLWLKSNvdgrDVLNSDAYERIFPKPNSrpktpnLRLEASRDSAVVLMNSLALVDMFMDPN-KWTELFPtivsVATT 274
                      67899***********************************998889********************************.*******9999**** PP

                      EEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
            START  82 levissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                      ++vissg   g lqlm+aelq+lsplv+ R+f+f+Ry++q ++g+w++vdvS d +q+     +  R++++pSg+li+++++ghsk+twvehv+
  Vradi01g02800.1 275 IQVISSGmmgGSLQLMYAELQVLSPLVSsREFYFLRYCQQIEKGTWAVVDVSYDFPQDSH-FGPHFRSRRRPSGCLIQDMPDGHSKITWVEHVE 367
                      **********************************************************99.78999**************************** PP

                      --SS.XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 172 lkgr.lphwllrslvksglaegaktwvatlqrqcek 206
                       +++ lph l+r l+ sg+a+ga +w+atlqr ce+
  Vradi01g02800.1 368 IEDKtLPHRLYRNLIYSGMAFGAERWLATLQRMCER 403
                      *876267***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000862.30E-61035No hitNo description
PfamPF000468.2E-61032IPR001356Homeobox domain
PROSITE profilePS5007110.561034IPR001356Homeobox domain
SuperFamilySSF466891.11E-61137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-81139IPR009057Homeodomain-like
PROSITE profilePS5084852.758172406IPR002913START domain
SuperFamilySSF559612.75E-39173404No hitNo description
CDDcd088759.41E-120176402No hitNo description
SMARTSM002342.5E-45181403IPR002913START domain
PfamPF018525.5E-49182403IPR002913START domain
Gene3DG3DSA:3.30.530.206.9E-10242386IPR023393START-like domain
SuperFamilySSF559611.03E-14426623No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MEYGSGGGGS QELGLAPRQI KFWFQNRRTQ MKAQHERADN CTLRADNDKI RCENIAIREA  60
LKNVICPSCG GPPLNDDSYF DDQKLRLENA HLKEELDRVS SIAAKYIGRP ISQLPPVQPI  120
HLSSLDLSMS CFGNQAMVDH VLAPSPSLNL DLLSAGTSSS VPNFPYQPPY LSDMDKSLMS  180
DIASNAMEEL LRLVQTNEPL WLKSNVDGRD VLNSDAYERI FPKPNSRPKT PNLRLEASRD  240
SAVVLMNSLA LVDMFMDPNK WTELFPTIVS VATTIQVISS GMMGGSLQLM YAELQVLSPL  300
VSSREFYFLR YCQQIEKGTW AVVDVSYDFP QDSHFGPHFR SRRRPSGCLI QDMPDGHSKI  360
TWVEHVEIED KTLPHRLYRN LIYSGMAFGA ERWLATLQRM CERLTYLMVT SDSTVDNPGG  420
VISSAEGKRS MMKLAQRMVT NFCGSIGTAN GRRWTTISGL NEILIRVTVH KSSNPGQPNG  480
VVLSAATTIW LPTPPHTVFN FFKDETKRPQ WDVLSNGNAV QEVAQITNGQ NADSSGSLVV  540
YCPVDLPSIN IAMSGEDTSC IPLLPNGFTI LPDGETEQEG DGASTSSNAN RNKARCGGSL  600
VTVAFQILVS SSPSAKLNME VTTVCNLIGS TVQQIKASLS CPT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g02800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508329.10.0homeobox-leucine zipper protein HDG11 isoform X2
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A1S3UQX00.0A0A1S3UQX0_VIGRR; homeobox-leucine zipper protein HDG11 isoform X2
STRINGXP_007160572.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]