PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g01850.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 333aa    MW: 35789.1 Da    PI: 4.9406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g01850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-0813362448
                     HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                     W++Ia +++ +Rt++++k++w+++l
  Vradi01g01850.1 13 WSAIATHLP-KRTDNEIKNYWNTHL 36
                     *********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.864140IPR017930Myb domain
SuperFamilySSF466893.02E-71245IPR009057Homeodomain-like
CDDcd001671.52E-61336No hitNo description
Gene3DG3DSA:1.10.10.602.0E-121347IPR009057Homeodomain-like
PfamPF002491.2E-61336IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MACSHHLCDY LMWSAIATHL PKRTDNEIKN YWNTHLKKRL TKMGIDPVTH KPKNDALLSS  60
DGQSKTAANL SHMAQWESAR LEAEARLVRE SKLRSHSLQQ QIGSSSTFAS SSSASTSASV  120
LNNNKPEAPP PPPPPPSRSS LDVLKAWNNG GWLKSSEGSG AIASTVGVSG DLESPTSTLS  180
FSENAPPIMN SIGGENNNNN DNAMPMIEFV GSSGNSSSLV KEEGEQEWKG YDSSINTFSS  240
GLHEFTMAME GTWVHETLRT NGSHDDIVEE GFTNLLLKTN SEDPSLSSEG GGESNNGDGG  300
SAGHSDFYED NNNYWNSILN LVNSSPSHSP MF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g01850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518062.10.0transcription factor MYB16
RefseqXP_022637727.10.0transcription factor MYB16
TrEMBLA0A1S3VIM40.0A0A1S3VIM4_VIGRR; transcription factor MYB16
STRINGXP_007151240.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.17e-50myb domain protein 106