PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g01810.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 373aa MW: 42610.1 Da PI: 6.9246

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g01810.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.9	9.6e-54	14	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPtdeelv +yLk+k+++k+l++ e ik+vdiyk++PwdLp + + ++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s Vradi01g01810.1 14 MPGFRFHPTDEELVGFYLKRKIQQKSLPI-ELIKQVDIYKHDPWDLPkELAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYS 106 79*************************.89***********445566899********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+ +glkk+Lvfy+gra kg ktdW+mhe+rl Vradi01g01810.1 107 SEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 140 ******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-56	11	171	IPR003441	NAC domain
PROSITE profile	PS51005	55.804	13	171	IPR003441	NAC domain
Pfam	PF02365	4.0E-26	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEERNEMEKI DDVMPGFRFH PTDEELVGFY LKRKIQQKSL PIELIKQVDI YKHDPWDLPK 60 ELAGTGEKEW YFYCPRDRKY RNSARPNRVT RAGFWKATGT DRPIYSSEGK CIGLKKSLVF 120 YRGRAAKGMK TDWMMHEFRL PCMSDSAPTK KLSDKTLPPS DSWAICRIFK KTNSLSMAQK 180 ALSHPWISQL SGSMVSDMFT QGAETNHHLG SPAIQFCYEK QELNQVSNSD INTNFTASDI 240 PSYKPINSST VPKPSPQIPV SDDFIFYTEH TKCTLDATSM LSPNPDYITF EEPNQQQYSG 300 FSTNLPHFIQ QNMTTETVTK EQEDWETIGR TTGFPFTLLP PYDAWKPSSV AWDSPSCPSD 360 MSTTYSTSKC YT*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEERNEMEKI DDVMPGFRFH PTDEELVGFY LKRKIQQKSL PIELIKQVDI YKHDPWDLPK  60
ELAGTGEKEW YFYCPRDRKY RNSARPNRVT RAGFWKATGT DRPIYSSEGK CIGLKKSLVF  120
YRGRAAKGMK TDWMMHEFRL PCMSDSAPTK KLSDKTLPPS DSWAICRIFK KTNSLSMAQK  180
ALSHPWISQL SGSMVSDMFT QGAETNHHLG SPAIQFCYEK QELNQVSNSD INTNFTASDI  240
PSYKPINSST VPKPSPQIPV SDDFIFYTEH TKCTLDATSM LSPNPDYITF EEPNQQQYSG  300
FSTNLPHFIQ QNMTTETVTK EQEDWETIGR TTGFPFTLLP PYDAWKPSSV AWDSPSCPSD  360
MSTTYSTSKC YT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-52	1	174	3	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g01810.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022631906.1	0.0	protein FEZ isoform X1
Swissprot	Q9FIW5	1e-92	NAC94_ARATH; Putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	9e-92	FEZ_ARATH; Protein FEZ
TrEMBL	A0A3Q0ELE5	0.0	A0A3Q0ELE5_VIGRR; protein FEZ isoform X1
STRING	XP_007151225.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	4e-95	NAC domain containing protein 94

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]