PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g01750.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 155aa    MW: 16673.7 Da    PI: 8.3023
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g01750.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer82.74.4e-265097450
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHR 50
                     v+YkeClkNh aslGgha+DGCgEfmps+ ++  +++++kCaACgCHR
  Vradi01g01750.1 50 VVYKECLKNHVASLGGHALDGCGEFMPSPAATaDDPSSIKCAACGCHR 97
                     89**************************9999889************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.9E-225097IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-195097IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.34152103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.8E-245297IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGFLGLIVVL EIEVDGREGK QRAGISPKPV SFSNGVLKRH HANNRTAAPV VYKECLKNHV  60
ASLGGHALDG CGEFMPSPAA TADDPSSIKC AACGCHRAEG EDARVRRQSG VEDAEARRKH  120
GYGVLQRGWC GQRSPQSVDA QQQEHFCQKG QPQW*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g01750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-102AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511481.11e-45zinc-finger homeodomain protein 9
RefseqXP_017438740.11e-45PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LXG02e-26ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A0L9VP283e-44A0A0L9VP28_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T8B13e-44A0A0S3T8B1_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UZH53e-44A0A1S3UZH5_VIGRR; zinc-finger homeodomain protein 9
STRINGXP_007151228.14e-41(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.17e-29homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]