PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g00570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 137aa MW: 15381.6 Da PI: 10.216 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1.1e-13 | 96 | 136 | 2 | 43 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 g WT++Ed lv++v+++G + W+ Ia+ ++ gR +kqc++r Vradi01g00570.1 96 GWWTPQEDSSLVELVNEFGLKKWTQIAKFLP-GRIGKQCRER 136 56*****************************.********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.111 | 90 | 136 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-13 | 90 | 136 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-16 | 92 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-4 | 94 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-13 | 96 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.59E-12 | 98 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MLTPSLGSSL GGFANVSHHH HPMMLPPPNN NNVLHGQHDG KVIWDFSQKT MIHPSHASSS 60 SNSPSCLSLP NITQYKWESN QKIKMKKNTN DLIIKGWWTP QEDSSLVELV NEFGLKKWTQ 120 IAKFLPGRIG KQCRER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-12 | 38 | 136 | 3 | 99 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-12 | 38 | 136 | 3 | 99 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g00570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-136 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014490478.1 | 1e-94 | transcription factor MYB118-like | ||||
TrEMBL | A0A1S3T9N8 | 2e-93 | A0A1S3T9N8_VIGRR; transcription factor MYB118-like | ||||
STRING | GLYMA03G15870.2 | 2e-38 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40727 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 3e-16 | myb domain protein 3r-4 |