PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g00290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 40063.7 Da PI: 6.1297 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.9 | 3.1e-30 | 31 | 172 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 p+G++F+P+d el+ ++L++k+ k + +++i++++ i++++P++Lp ++++ ++++fF+k+ ++yatg+rk+r+ Vradi01g00290.1 31 PVGVKFDPSDVELL-KHLEAKCCVGKreqhmfI--HKFIPTLEgeqgICYTHPENLP-GARKDGNSVHFFHKTVNAYATGRRKRRKihhqdgls 120 89************.889999765553555331..233444323334**********.55667899*******************857776666 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tg++k+v++ +g ++g kk++v+y ++ +k+ kt+Wvmh+y+l Vradi01g00290.1 121 EEHVRWHKTGRTKSVIE-DGVHKGFKKIMVLYvrPKEGSKPYKTNWVMHQYHL 172 55899************.999***********6533555566*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-34 | 23 | 191 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.247 | 30 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-12 | 31 | 172 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MARETSPGSV LVGAYFSKII GRVSDEWSGF PVGVKFDPSD VELLKHLEAK CCVGKREQHM 60 FIHKFIPTLE GEQGICYTHP ENLPGARKDG NSVHFFHKTV NAYATGRRKR RKIHHQDGLS 120 EEHVRWHKTG RTKSVIEDGV HKGFKKIMVL YVRPKEGSKP YKTNWVMHQY HLGSEEEEKN 180 GEYVVSKIFY QQQKHSEKNE ENTVVEDSNI AAQTGPSTPK PNPPTRPCTG KCDDNFDENE 240 LLSFIQDAKP IPGELLAPPS DVLDEDIKVD PAWLAGESHA DCDFHGLEEI FSMSDSSALF 300 NHSGLASTLD NTANNMVAPG NNDDYASSGV SVLDTLEQHP SLDGQAIRCS FEATLRWF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g00290.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015643 | 0.0 | AP015643.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0599, complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014489660.2 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 6e-67 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1S3T7C3 | 0.0 | A0A1S3T7C3_VIGRR; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
STRING | XP_007150911.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7572 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 3e-68 | NAC family protein |