PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0195s00050.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GeBP
Protein Properties Length: 389aa    MW: 43515.6 Da    PI: 6.9803
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0195s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.35.3e-34180275297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                        lfqr+wseeDe+ +L+G+++f +ktg++p+  +daf++f+kks++++vs+ ql +Kirr+KkKf+++++k+k+g ep++ ++hd+  fe+sk
  Vradi0195s00050.1 180 LFQRIWSEEDELGILKGILEFISKTGQEPYRYVDAFHNFIKKSLHVEVSSLQLKDKIRRMKKKFETHEAKKKKGIEPRLLRPHDRALFEFSK 271
                        69****************************************************************************************** PP

             DUF573  94 kiWg 97 
                        kiWg
  Vradi0195s00050.1 272 KIWG 275
                        ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.9E-30181275IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MTKKRKQRPE SVEDLSTASS YESEEDDDRS HSSQQHAAAA QPHPKSSSES ESDTGTEPAR  60
VKSKAKPTDL PQPKVQAQRS STPVKLGSKR PAHSTEPKRT KKNPDEAPFP SVANDETSVV  120
NDETSVANDV TSVANDETSV ANDVTSVAND ETSVANDETS VANDETKEDG KKSDGQAKVL  180
FQRIWSEEDE LGILKGILEF ISKTGQEPYR YVDAFHNFIK KSLHVEVSSL QLKDKIRRMK  240
KKFETHEAKK KKGIEPRLLR PHDRALFEFS KKIWGEWPNG LVEKPKPLAK YVTKAQKESE  300
AKAKVLSQPS VPESGDVNLL YNNISCFKEL DEDEMKRGLT LIGESKRKEL ERRWKVLQYS  360
EMELLGNRSL LIGEQIKLVS QALQSSND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0195s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-162AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522910.10.0probable transcription factor At1g11510 isoform X1
TrEMBLA0A1S3VX720.0A0A1S3VX72_VIGRR; probable transcription factor At1g11510 isoform X1
STRINGXP_007151503.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.18e-23DNA-binding storekeeper protein-related transcriptional regulator