PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0189s00030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29316.1 Da    PI: 7.0635
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0189s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.1e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Vradi0189s00030.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                       79***********************************************96 PP
2K-box851.6e-289818414100
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                         ++ +qe+ kLk+++e Lq++qR+llGe+Le L++keL+qLe+qL++slk+iRs K++ +l+q+++l +ke++l e+n+ Lr+klee
  Vradi0189s00030.1  98 VQRRYQEYLKLKSKVEALQQTQRNLLGEELEHLDVKELEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNNILRNKLEE 184
                        58899*******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.179161IPR002100Transcription factor, MADS-box
CDDcd002654.19E-46278No hitNo description
SuperFamilySSF554558.24E-34283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-333859IPR002100Transcription factor, MADS-box
CDDcd060930.0045585153No hitNo description
PfamPF014861.9E-2597182IPR002487Transcription factor, K-box
PROSITE profilePS5129715.87698188IPR002487Transcription factor, K-box
Gene3DG3DSA:3.10.450.500.001127244IPR032710NTF2-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG  60
PSMAKTLERY HRCSYGALEL HHQPEIETQA KMNEHWVVQR RYQEYLKLKS KVEALQQTQR  120
NLLGEELEHL DVKELEQLER QLDSSLKQIR SNKTQQMLDQ LSDLHRKEEM LLETNNILRN  180
KLEEINVALQ PTWEAREQTA PYDGHPHPSE GYYDTAHCNS TLRIGYDSSG LNEAGGGAGT  240
SAQNASEFMH GWMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-26751821101Developmental protein SEPALLATA 3
4ox0_B1e-26751821101Developmental protein SEPALLATA 3
4ox0_C1e-26751821101Developmental protein SEPALLATA 3
4ox0_D1e-26751821101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0189s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-98AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522257.11e-179MADS-box protein CMB1-like
SwissprotQ8LLR21e-105MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S3VVP51e-178A0A1S3VVP5_VIGRR; MADS-box protein CMB1-like
STRINGGLYMA02G13401.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.17e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]