PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0184s00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 159aa MW: 17192.9 Da PI: 9.6559 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.5e-08 | 18 | 57 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 + + E +ll++ v ++G + W++I+r ++ ++t +c+s++ Vradi0184s00130.1 18 NYGEKEILLLLESVLKHGDD-WELISRSVQ-TKTILDCISKL 57 5668899***********88.*********.*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.15E-7 | 14 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.23 | 14 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 4.7E-5 | 15 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-7 | 17 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.83E-5 | 21 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MLVPRRAKTG GNCFKSGNYG EKEILLLLES VLKHGDDWEL ISRSVQTKTI LDCISKLIEL 60 PFGELVFDPA HRNVNVSSAN GIVNGNAVKR SPSKRQHINP VSDSSASIMN QVGLISNVVD 120 PRITAAAAEA AVSALCVQGR YLTLKKIQQE ILREKVVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:16055636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0184s00130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 2e-85 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422735.1 | 5e-51 | PREDICTED: SWI/SNF complex subunit SWI3A | ||||
Swissprot | Q8W475 | 5e-19 | SWI3A_ARATH; SWI/SNF complex subunit SWI3A | ||||
TrEMBL | A0A0S3RE83 | 1e-49 | A0A0S3RE83_PHAAN; Uncharacterized protein | ||||
STRING | XP_007137507.1 | 2e-49 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9816 | 2 | 2 |
Publications ? help Back to Top | |||
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