PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0176s00070.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 366aa    MW: 40521 Da    PI: 6.9129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0176s00070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-174594255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Vradi0176s00070.1 45 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 94
                       59*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.08945102IPR001471AP2/ERF domain
SMARTSM003805.4E-3345108IPR001471AP2/ERF domain
CDDcd000184.61E-3045101No hitNo description
Gene3DG3DSA:3.30.730.102.0E-2945101IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2145102IPR016177DNA-binding domain
PfamPF008479.1E-114594IPR001471AP2/ERF domain
PRINTSPR003672.0E-94657IPR001471AP2/ERF domain
PRINTSPR003672.0E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEEALRRLNG VTPTQEPDVV SEPHPKKCAA KRTLRDTTNS GTAMRYRGVR RRPWGRYAAE  60
IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGVKARTN FVYPDAADPH LFHPFNLPKH  120
CHVSRFPHNT NLGSDFPASS HNSSSSSTSS LNMLLFRDFL NSSSNPCLLS SASSQQFHDS  180
KSASYVNPSS STLSPSATNY LHGCCVGNAD NYQNTVSVNH GVEVADVIDE DSDFFPRESS  240
DSGLLEEIVH KFLPKSKPKV ETSTMSQSVP ESVPQQIFDH VVVSASKGYG DSRMRVPKVE  300
GFGVCHDAPM QQFEAFSGFN AMHGMTSIQR DNQLMLNHIP GFSSIEDYLQ YSELFNSFAT  360
RMQNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-19451011471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0176s00070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523968.10.0ethylene-responsive transcription factor ESR2
TrEMBLA0A1S3W0020.0A0A1S3W002_VIGRR; ethylene-responsive transcription factor ESR2
STRINGXP_007153786.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-14DORNROSCHEN-like