PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0171s00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 204aa MW: 22050.7 Da PI: 8.3915 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sFs+ L H+r+H Vradi0171s00130.1 4 HKCKLCFRSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00087 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++F + L H rtH Vradi0171s00130.1 130 HECPVCFRVFASGQALGGHKRTH 152 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.5E-6 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.065 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.679 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.4E-8 | 4 | 26 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-6 | 84 | 100 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.4E-8 | 125 | 152 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.3E-4 | 128 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.307 | 130 | 157 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.6E-11 | 130 | 152 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 130 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 132 | 152 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDKHKCKLCF RSFSNGRALG GHMRSHMMNL PLSKPEEASP RTIQLSFEAE SASSSSSSSD 60 DDEDGDKGLC YGLRENPKRS IRLVFRSYQA LGGHRASHKK IKVNVKVDGE EAEVEHRKKS 120 GTCGAEKKIH ECPVCFRVFA SGQALGGHKR THVTGSAPAT VASASAKFGN SFIDLNLPAP 180 IDEDEASQIE NSAVSDAEFV KTR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0171s00130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022632659.1 | 3e-79 | zinc finger protein ZAT9 | ||||
Swissprot | Q9M202 | 8e-27 | ZAT9_ARATH; Zinc finger protein ZAT9 | ||||
TrEMBL | A0A3Q0EQF4 | 7e-78 | A0A3Q0EQF4_VIGRR; zinc finger protein ZAT9 | ||||
STRING | XP_007140808.1 | 3e-76 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 7e-29 | C2H2-like zinc finger protein |