PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0170s00120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 375aa    MW: 42360.4 Da    PI: 8.7807
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0170s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-191360148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++l+d+++++G g W+t ++  g++R++k+c++rw +yl
  Vradi0170s00120.1 13 KGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLRRCGKSCRLRWANYL 60
                       79********************************************97 PP
2Myb_DNA-binding53.94e-1766110147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rgr++ eE+e +++++  lG++ W+tIa+ ++ gRt++++k++w+++
  Vradi0170s00120.1  66 RGRFSFEEEEAIIQLHSVLGNK-WSTIAANLP-GRTDNEIKNYWNTH 110
                        89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-25663IPR009057Homeodomain-like
PROSITE profilePS5129419.625860IPR017930Myb domain
SuperFamilySSF466892.25E-3110107IPR009057Homeodomain-like
SMARTSM007173.3E-151262IPR001005SANT/Myb domain
PfamPF002494.0E-171360IPR001005SANT/Myb domain
CDDcd001673.79E-121560No hitNo description
PROSITE profilePS5129426.1261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2664115IPR009057Homeodomain-like
SMARTSM007173.4E-1665113IPR001005SANT/Myb domain
PfamPF002491.1E-1466110IPR001005SANT/Myb domain
CDDcd001671.25E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTKSSTEKNG LKKGPWTPEE DQKLIDYIQK HGHGKWRTLP KNAGLRRCGK SCRLRWANYL  60
RPDIKRGRFS FEEEEAIIQL HSVLGNKWST IAANLPGRTD NEIKNYWNTH IKKKLFKMGI  120
DPVTHTPRLD VLQLASILNT SLFNSSPQFN YPFLSGRSMI NSSQLLSLLS TLLSCQSRNN  180
PDNVLNHNNF HQNDNQLLQN QPQCTQMQLD DTLQTFQPNQ RQVSLQENLI AKSNNPLNVD  240
HQLMKSKLEN QISPVATSFT HQNTLPNLWH YDNISDLQIA QSSSTMQCFS SPKFNSIFNS  300
LLENQNLCNN EGMPNFNLSS LLSSTTSSSS PSTLNSSSST TFVNGTTEDE RDTYGSRNML  360
MYNISNGLND SGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31111155108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0170s00120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524064.10.0transcription factor MYB41
TrEMBLA0A1S3W1C40.0A0A1S3W1C4_VIGRR; transcription factor MYB41
STRINGGLYMA13G35810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151201013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-88MYB-like 102