PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0169s00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 343aa MW: 37734.9 Da PI: 4.3363 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.4 | 8.4e-09 | 108 | 128 | 2 | 22 |
AP2 2 gykGVrwdkkrgrWvAeIrd.p 22 +ykGVr +k +g+W+AeIrd + Vradi0169s00120.1 108 KYKGVRMRK-WGKWAAEIRDpF 128 8******99.**********44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 0.0021 | 108 | 152 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-8 | 108 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.771 | 108 | 221 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-5 | 108 | 129 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MLEALNQSAK TMKKLKQKRN PFHDSKMTRK LRIICDDPDA TDSSSDEEEH FGNCRKVKRT 60 MVEIALPPVP VNSLIAAETS TESSNNEELN KKRVLAKTPS VKRQTCGKYK GVRMRKWGKW 120 AAEIRDPFKD AAESATDSKS ATIDYSESSI LSHTSPYSVL ELDTSASNLT VSGKVSGNEV 180 VETKGLETEV AEIETEGLKA ESFEAEFAEL DIPDLSMLSV PHPSAVAANA ANVANVGAPS 240 EFEFDWFALD SLEHGFDDDL AALEDIQIYG FDDGQPSELP DYDFDDIGAD EFAGFQNCKG 300 ENYLPVPRRD FYELVETLLL CLEVHGGKMN SCDDMVEDKH GG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0169s00120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426447.1 | 1e-101 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
Refseq | XP_017426448.1 | 1e-101 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
Refseq | XP_017426449.1 | 1e-101 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A0L9UT79 | 1e-100 | A0A0L9UT79_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T2G6 | 1e-100 | A0A0S3T2G6_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA08G30716.2 | 2e-97 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-27 | ERF family protein |