PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0161s00350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 394aa    MW: 45131.9 Da    PI: 8.9232
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0161s00350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-3182135255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+
  Vradi0161s00350.1  82 PRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 135
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.21878138IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-3078136IPR009057Homeodomain-like
SuperFamilySSF466898.24E-1580136IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-2282137IPR006447Myb domain, plants
PfamPF002492.9E-983134IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSDEYEMSDE QVDDSSIGSS QKCSSFDLNE EASSENNSKD NDTRYEEAKD EGTSTNKSSS  60
ITREGNSERR GGVRQYVRSK MPRLRWTPEL HLSFVHAVER LGGQERATPK LVLQLMNVRG  120
LSIAHVKSHL QMYRSKKLDE AGQVLSETYK SSHELGRISH ATHPRQHFKM GNGGIILASD  180
YTDHSYYHGL LHPSNLSHSH SKAIDSRHQQ WFFNNHQPFR KPSYFSNEIG SATLQTQARS  240
MSSNQIQVMD ATSIAPMRPS QFLEEKRWPP LEIMNSHPWK KRLPSNTESK SVLLHQFGST  300
TSPSLRPTEL NFPNKTRFRE HLSNSDEHRS YSNAFNPEFE PPFRIKSNQE KMQKEKQWVP  360
DLRLSLSQRD GNSDGKNDHC RETQEINTKL SLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1783137458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1783137458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1783137458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1783137458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1783137458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1783137458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1783137458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1783137458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0161s00350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523478.10.0two-component response regulator ARR18
TrEMBLA0A1S3VYR20.0A0A1S3VYR2_VIGRR; two-component response regulator ARR18
STRINGXP_007159455.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-37G2-like family protein