PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0161s00310.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 230aa    MW: 25575.7 Da    PI: 6.7583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0161s00310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17655255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ GVr++  +g+W+AeI+d s   k+ r +lg++ taeeAa+a+++a+  l+g
  Vradi0161s00310.1  6 KFVGVRQRA-SGKWAAEIKDTS---KKIRMWLGTYQTAEEAARAYDEAACLLRG 55
                       799***999.7*********42...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-11655IPR001471AP2/ERF domain
PROSITE profilePS5103219.44663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-27663IPR001471AP2/ERF domain
SMARTSM003802.3E-34669IPR001471AP2/ERF domain
CDDcd000183.07E-31662No hitNo description
SuperFamilySSF541713.86E-19664IPR016177DNA-binding domain
PRINTSPR003674.4E-7718IPR001471AP2/ERF domain
PRINTSPR003674.4E-72945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MKNKNKFVGV RQRASGKWAA EIKDTSKKIR MWLGTYQTAE EAARAYDEAA CLLRGSNTRT  60
NFSTQPCTSI ATNSPISLKL RNLLHRKAMS NQSQVQNQPS GVSPSLQGAA TPNGSTMNNI  120
MVMEETSGFS GEGDKSLFVI QNQVSDNMYG LDMNMINCVM GITPDASQLD FSSWSFAQQR  180
INELPLPKDG FGVERQLSES VYATNECQHF QDTYEYDVNY PLSHFFCFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-135621371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0161s00310.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523453.11e-174ethylene-responsive transcription factor RAP2-11 isoform X1
RefseqXP_022632435.11e-174ethylene-responsive transcription factor RAP2-11 isoform X2
SwissprotA9Y0K92e-88ERN3_MEDTR; Ethylene-responsive transcription factor ERN3
TrEMBLA0A1S3VYP11e-173A0A1S3VYP1_VIGRR; ethylene-responsive transcription factor RAP2-11 isoform X1
TrEMBLA0A3Q0ELA21e-173A0A3Q0ELA2_VIGRR; ethylene-responsive transcription factor RAP2-11 isoform X2
STRINGXP_007159432.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF156461010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-29related to AP2 11
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]