PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0158s00330.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 418aa MW: 45112.8 Da PI: 7.0197

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0158s00330.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	218	276	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l se+ Vradi0158s00330.1 218 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSEN 276 9*****************************************99999888777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-16	214	278	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	216	279	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.1E-9	218	276	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-8	218	273	No hit	No description
SuperFamily	SSF57959	9.14E-11	218	269	No hit	No description
CDD	cd14703	7.98E-23	219	268	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
ILCVGNVGRK KDERLRVIVL ETEHRSEKNR TQKGMATQTQ DSPSNPNPNP NATSPTPSSS 60 LFFRGAGASA APVAGSGESH SHHRRALSEV SYRLPDDMMD LSPSDPFNGG SSTASLEEIG 120 SEDDLFSTYI DVEKLGSGAN GAGRGGNGSD QSGYGNGAGT SGHNDGEKSP RAAEARPRHR 180 HSSSVDGSSS TSMFGEIMEA KKAMPPDKLA ELWNIDPKRA KRILANRQSA ARSKERKARY 240 IQELERKVQT LQTEATTLSA QLTLYQRDTT GLSSENTELK LRLQAMEQQA QLRDALNDAL 300 MKEVERLKIA TGEVLNNHSE SFNMGMHQMP FAGSNFFSIP PHSGPPSHQN MQLPPYGLSQ 360 SSMPAHQLQQ TNSHQISDIL QNDQLGRLQG LDISSKGSPF VKSEGPSISA NDSSTTF*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

ILCVGNVGRK KDERLRVIVL ETEHRSEKNR TQKGMATQTQ DSPSNPNPNP NATSPTPSSS  60
LFFRGAGASA APVAGSGESH SHHRRALSEV SYRLPDDMMD LSPSDPFNGG SSTASLEEIG  120
SEDDLFSTYI DVEKLGSGAN GAGRGGNGSD QSGYGNGAGT SGHNDGEKSP RAAEARPRHR  180
HSSSVDGSSS TSMFGEIMEA KKAMPPDKLA ELWNIDPKRA KRILANRQSA ARSKERKARY  240
IQELERKVQT LQTEATTLSA QLTLYQRDTT GLSSENTELK LRLQAMEQQA QLRDALNDAL  300
MKEVERLKIA TGEVLNNHSE SFNMGMHQMP FAGSNFFSIP PHSGPPSHQN MQLPPYGLSQ  360
SSMPAHQLQQ TNSHQISDIL QNDQLGRLQG LDISSKGSPF VKSEGPSISA NDSSTTF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	14	GRKKDERL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0158s00330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014489625.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-104	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A1S3T786	0.0	A0A1S3T786_VIGRR; transcription factor RF2b
STRING	XP_007146883.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	1e-90	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]