PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0154s00350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 463aa    MW: 51080.2 Da    PI: 8.9216
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0154s00350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-09175217345
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Vradi0154s00350.1 175 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 217
                        568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-7168220No hitNo description
PfamPF077166.6E-7173219IPR004827Basic-leucine zipper domain
SMARTSM003381.8E-7173236IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415175219IPR004827Basic-leucine zipper domain
CDDcd147083.91E-21177229No hitNo description
SuperFamilySSF579596.88E-7177220No hitNo description
PROSITE patternPS000360180195IPR004827Basic-leucine zipper domain
PfamPF141443.0E-30260334IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGSRSRTVNV TSKDTNKVVN GMPSYAPPLP SSSSMGIEAT NVHPSRISEF GTLEQSLGFR  60
VEDTINLSRN PVFSQMKSNS QALGADIQFG ALNKVQSIVT SDINLSAAIA GSQTLALQKD  120
AQPNLASTSG HRENWGETNM ADASPRTDTS TDDTEDKNQL PERGESSDRS KDKSDQKTLR  180
RLAQNREAAR KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISST GDQAQSMSGN  240
GAMAFDVEYA RWLEEHNRQT NELRAAINSH AGDIELRTIV DNFMAQFDDI FRLKGIAAKA  300
DVFHILSGMW KTPAERCFMW IGGFRSSELL KLLVSQLEPL TEQQLMGIYN LQQSSQQAED  360
ALSQGMDALQ QSLSETLANG SPNSSGSSGN VANYMGQMAM AMGKLGTLEG FLRQADNLRQ  420
QTLQQMLRIL TTRQSARALL AISDYFSRLR ALSSLWLARP RE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0154s00350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026090.0AF402609.1 Phaseolus vulgaris TGA-type basic leucine zipper protein TGA2.2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014489757.10.0transcription factor TGA2.3 isoform X1
RefseqXP_014489758.10.0transcription factor TGA2.3 isoform X1
RefseqXP_022632870.10.0transcription factor TGA2.3 isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A1S3T7L60.0A0A1S3T7L6_VIGRR; transcription factor TGA2.3 isoform X1
STRINGXP_007162093.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-142TGACG motif-binding factor 6