PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0153s00520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 298aa    MW: 32607.1 Da    PI: 6.8311
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0153s00520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.31.4e-15226262135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Vradi0153s00520.1 226 CRHCGISEkcTPMMRRGPEGPRTLCNACGLMWANKGT 262
                        **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.62482117IPR010399Tify domain
SMARTSM009795.8E-1182117IPR010399Tify domain
PfamPF062001.3E-1286116IPR010399Tify domain
PROSITE profilePS5101713.205150192IPR010402CCT domain
PfamPF062036.2E-16150192IPR010402CCT domain
SMARTSM004016.5E-14220273IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.629220279IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-12223272No hitNo description
Gene3DG3DSA:3.30.50.105.1E-15224267IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.81E-14225281No hitNo description
PROSITE patternPS003440226253IPR000679Zinc finger, GATA-type
PfamPF003201.8E-13226262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDGIHGGDSR IHISDGQHPI HVPYVQEHEH HGLHHMSNGN GIDEDQNDGG DTNCGGSESV  60
EGDIPSSHGN LPDNHAVIMD QGGDAGDQLT LSFQGQVYVF DSVSPEKVQA VLLLLGGREI  120
PPTMPTMPVS PHHNNRGFTG TPQKFSVPQR LASLIRFREK RKERNFDKKI RYTVRKEVAL  180
RMQRNKGQFT SSKSNHDESA STATNWGPNE NWSAENNGSQ LQDIVCRHCG ISEKCTPMMR  240
RGPEGPRTLC NACGLMWANK GTLRDLSRAA PISGPIKNEN KSLEANHRVA GEADDLS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0153s00520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-173AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014489864.10.0GATA transcription factor 28 isoform X1
SwissprotQ8H1G01e-134GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A1S3T7X20.0A0A1S3T7X2_VIGRR; GATA transcription factor 28 isoform X1
STRINGXP_007142122.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-136ZIM-LIKE 2