PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0153s00150.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 302aa    MW: 34317.6 Da    PI: 6.8701
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0153s00150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.5e-133793155
                AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                       s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  Vradi0153s00150.1 37 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQSKKGRQGAYDDEEAAARAYDLAALKYWG 93
                       57*******************99998888888888********************98 PP
2AP252.71e-16136188156
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g+
  Vradi0153s00150.1 136 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRGA 188
                        89****99**********99966...3.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-93793IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1537102IPR016177DNA-binding domain
SMARTSM003807.6E-2238107IPR001471AP2/ERF domain
PROSITE profilePS5103219.01938101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-1338102IPR001471AP2/ERF domain
PRINTSPR003671.3E-63950IPR001471AP2/ERF domain
CDDcd000182.05E-15136197No hitNo description
PfamPF008474.3E-12136187IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18136197IPR016177DNA-binding domain
SMARTSM003801.9E-24137201IPR001471AP2/ERF domain
PROSITE profilePS5103218.255137195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18137196IPR001471AP2/ERF domain
PRINTSPR003671.3E-6177197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MARKSQKTLK NTDTNNTNTA KRTRKTVPRD SPPQRSSIYR GVTRHRWTGR YEAHLWDKNC  60
WNESQSKKGR QGAYDDEEAA ARAYDLAALK YWGQDTILNF PLTNYEEKLK EMEGQSKEEY  120
IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT QEEAAAAYDM  180
AAIEYRGANA VTNFDVSRYI NWPGPKSEEE HKNVAINENV NSNGDIELGF VSHEHGSITD  240
VNTTEHVAQS TESNPSRRTF PEDIQTIFES QGPDIYTEND DIIFGDLGSF GAPIFHFELD  300
V*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0153s00150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429765.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-113AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0S3RLF70.0A0A0S3RLF7_PHAAN; Uncharacterized protein
STRINGXP_007142112.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-98ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]