PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0149s00170.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 289aa    MW: 32087 Da    PI: 10.5443
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0149s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.23.8e-31134220270
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssa 70 
                        +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+       t                  ++ sa
  Vradi0149s00170.1 134 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTVTWNNEATtgghvsrmgfflnsqpfiGQGSA 220
                        79*****************************************************97766555545666666655544444422222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-28134191IPR005333Transcription factor, TCP
PROSITE profilePS5136927.087136194IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MHAACLTMGL NEHSGRIVTI QSLWAAAADE GLQATIVKGN SKQSKYHPPS PIQSPHDSQQ  60
QNLISTHRAH YQVSQNQPPY VEGIGRSSHG IEPSTLDQAI KHRKHNREGT FTRVMRSSVG  120
DIVQVEGGHI VRSTGRKDRH SKVYTSKGPR DRRVRLSAHT AIEFYDVQDR LGYDRPSKAV  180
DWLIKKAKTV TWNNEATTGG HVSRMGFFLN SQPFIGQGSA SAYAQSETLQ SSFSFPMTSS  240
EHQRPQPVHQ PSLFGTRFAV SDGLAGFCIP DRIQGVFSTR FWNRVKII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-19141185145Putative transcription factor PCF6
5zkt_B5e-19141185145Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0149s00170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027929174.13e-63transcription factor TCP3-like isoform X2
TrEMBLA0A4D6LCG45e-73A0A4D6LCG4_VIGUN; Transcription factor TCP subgroup
TrEMBLA0A4D6LCX83e-74A0A4D6LCX8_VIGUN; Transcription factor TCP subgroup
TrEMBLA0A4D6NGL72e-72A0A4D6NGL7_VIGUN; Transcription factor TCP subgroup
STRINGXP_007134584.16e-48(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-40TCP domain protein 10