PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0149s00030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 259aa    MW: 28710.6 Da    PI: 6.5193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0149s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-1372118354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN  +++Lr+++P a      K++Ka+ L ++++++k+L
  Vradi0149s00030.1  72 KNHSEAERRRRARINAHLDTLRSVIPGA-----MKMDKASLLGEVIRHLKEL 118
                        58*************************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.10169118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-1472120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1372122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-1172118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1375124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.27E-582120No hitNo description
CDDcd048732.30E-7157228No hitNo description
Gene3DG3DSA:3.30.70.2603.1E-5157199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEMEEFLWGG DIDGDVPKGN SDGFEGSSGM IGSGCGSSFS LVLDRERGEL VEAPVKLERK  60
GMSTERSTEA LKNHSEAERR RRARINAHLD TLRSVIPGAM KMDKASLLGE VIRHLKELKR  120
NAAQACEGLM IPKDNDEISV EEQEGGLNGF PYSIRASLCC EYKPGLLSDI RQALDSLHLM  180
ITRADIATLE GRMKNVFVII SCKEHNFEDA SYRQFLAGSV HQALRSVLNR FSVSQDILGT  240
RKRRRISIFS SSSLEDFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240244RKRRR
2241245KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0149s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524401.10.0transcription factor bHLH30
TrEMBLA0A1S3W1H80.0A0A1S3W1H8_VIGRR; transcription factor bHLH30
STRINGGLYMA12G14400.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-28bHLH family protein