PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0146s00260.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 271aa    MW: 30417.5 Da    PI: 9.9273
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0146s00260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.67.1e-25180249159
                        ---SS-EEEEEEE--TT-SS-...........EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefp...........rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+++fp           rsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+
  Vradi0146s00260.1 180 LDDGYRWRKYGQKAVKNNKFPsaiheavkemcRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHP 249
                        59****************998888888888889************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-31165249IPR003657WRKY domain
SuperFamilySSF1182901.1E-25172250IPR003657WRKY domain
PROSITE profilePS5081124.96175251IPR003657WRKY domain
SMARTSM007748.7E-34180250IPR003657WRKY domain
PfamPF031067.9E-20181249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
TRFGWVHVCI DDISHVNIKR RPNHLYLLKS FYHIHFSFSE TLFIPTTSFL SLTIYIVRRK  60
IGVGLVSMEN YSMLFPCPNS SSYPISKSGV GTSQHGFGGQ SSNAFLGLRP SNESSGSDHE  120
KRGEGGRDAA VLMSQITAGI NVSDELGGLG NGNSNGKKKG EKKVRKPRYA FQTRSQVDIL  180
DDGYRWRKYG QKAVKNNKFP SAIHEAVKEM CRSYYRCTHQ GCNVKKQVQR LTKDEGVVVT  240
TYEGVHTHPI EKTTDNFEHI LSQMQIYTPF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-23170250776Probable WRKY transcription factor 4
2lex_A5e-23170250776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0146s00260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161664.11e-130hypothetical protein PHAVU_001G088200g
TrEMBLV7CWD61e-128V7CWD6_PHAVU; Uncharacterized protein
STRINGXP_007161664.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.12e-54WRKY DNA-binding protein 75