PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0133s00310.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 524aa    MW: 57906.9 Da    PI: 7.1119
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0133s00310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-093203571954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Vradi0133s00310.1 320 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 357
                        554459******************************88 PP
2BELL102.33.5e-33192260472
               BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        ++ +kk++Ll++l+eV++rY+qy++q+++v+ sFe v gl +a+pY+slA ka+S+hFrcLk+ai++q+
  Vradi0133s00310.1 192 DHGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLRNAAPYASLAIKAMSKHFRCLKNAITDQL 260
                        6789**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.3E-43129258IPR006563POX domain
PfamPF075264.1E-37136257IPR006563POX domain
PROSITE profilePS5007112.098298361IPR001356Homeobox domain
CDDcd000864.83E-13301362No hitNo description
SMARTSM003893.4E-10301365IPR001356Homeobox domain
SuperFamilySSF466894.02E-17303368IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-28304365IPR009057Homeodomain-like
PfamPF059209.0E-19318357IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MEQTHINTYT IHQPLPGIAG GHPSENPIGL RPYSLRVVGT QNQHGLVEPS TLLPLYDPSS  60
FISSDLLTSF HNSHKQNLGC GVKEERANLM MGFAGRGGEG GGVMNNGSSS LCCSSNSSSV  120
SYLDPESSLP LSQATIQGSR FLKPAQQLLE ELCDVGGVCA EKMVADASLM EPVPLLPPEN  180
SSEDLLGDHG DDHGRKKSRL LTMLDEVYRR YRQYYQQMHA VVTSFEYVSG LRNAAPYASL  240
AIKAMSKHFR CLKNAITDQL QFANKAHFHI SNRKDESSRF GNSDRGPYSQ RPGFLEHQPV  300
WRPQRGLPER AVTVLRAWLF EHFLHPYPTD TDKLMLAKQT GLSRSQVSNW FINARVRLWK  360
PMVEEIHMLE TRQAQNLKNS QKEEHCRNKS SDQLPSDNSI VSENPSGSTE KFQGPPYKRA  420
TDELPNIPVR TQEQLNLHCT SNQPGGVEVS MGGSASNSVS LTLGLHQNHG IGLAEPFTLN  480
AAQRFGVALE TNNEGYVMSG YESQNRHFGR DVIGGQLAHD FVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16307365563Homeobox protein Meis2
4xrm_B4e-16307365563Homeobox protein Meis2
4xrs_A4e-16307364158Homeobox protein Meis1
4xrs_B4e-16307364158Homeobox protein Meis1
5bng_A4e-16307365159Homeobox protein Meis2
5bng_B4e-16307365159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0133s00310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490780.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-103BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A1S3TAI70.0A0A1S3TAI7_VIGRR; BEL1-like homeodomain protein 9
STRINGXP_007134014.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-94TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]